MK614217.1 | ICGRC

Annotations

Contact

Cross Reference

Location on Map

Properties

Relationship

Publication

Sequences

Summary

Annotations

This record has the following annotations.
Term	Name	Definition
GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai]
GO:0016829	lyase activity
GO:0010333	terpene synthase activity	Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. [EC:4.2.3.-, GOC:tair_curators]
INTERPRO:IPR008930	Terpenoid_cyclase/PrenylTrfase
INTERPRO:IPR001906	Terpene_synth_N
INTERPRO:IPR008949	Isoprenoid_synthase_dom_sf
INTERPRO:IPR036965	Terpene_synth_N_sf
INTERPRO:IPR005630	Terpene_synthase_metal-bd

Click a tab below to view blast alignments.

blastn of TPS CDS against pkv5 genome

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 genome
Display provided by the neXtProt Feature Viewer

Show Results Table

[Close]

BLAST of MK614217.1 vs. Genbank
Match Name: CM010790.2
Description: Cannabis sativa cultivar Purple Kush chromosome 1, whole genome shotgun sequence

HSP 1 Score: 368.604 bits (199), Expect = 1.833e-99
Identity = 260/288 (90.28%), Postives = 260/288 (90.28%), Query Frame = 1

Query:      305 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAGATTAACTCTTTAGCCCTACTCGAGCTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAA------TATTACTAACCATAATT---ATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCAAACATGGCTATGCAGTTCCTCAAG 583
                |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||| || |||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||      ||||||||||| |||||   ||||||||||  ||||||||||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct:  3066040 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGGTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAG 3066327

HSP 2 Score: 259.651 bits (140), Expect = 1.151e-66
Identity = 326/414 (78.74%), Postives = 326/414 (78.74%), Query Frame = 1

Query:      582 AGAAATTTTTAAT-ATATTCAAAGACATGAG-T-GGAAAATTTAAAGCAATCATAAATGATGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAAC-CAAGTGTCTCGAAAATTACATGATGAT-A-A-CAGAGGAAAACAAATTAGATGA-TGACGATGATCATAATAAT-ATTATTGTA-GTAATTAG--A--CATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACAT 981
                ||| ||||||||| || || || |||  ||| | |||||| | ||| | | ||| | |  |||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| || || || |||| |||  |||||||||| ||| | |||  | || ||||| || || | | || | ||||  || ||| |||| |||  ||||| || || || |||||  ||   || |||  |  || || || ||||| |||||||||||||||||| ||||||| || || |||||||| ||||| |  || ||||||| |||||| |||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||  ||||| |||||||||||||||
Sbjct:  2519050 AGAGATTTTTAATCAT-TTTAAGGAC--GAGATAGGAAAAATCAAAACGAACATGATTAGTGATGATATTATGGAAGTATTGGCCTTATATGAAGCTTCATTCTATGAGAAAAAAGGCGAAAGTATTTTAGAAGAAGTTAGAATTTTCACAACTCAA-TATCTAAAGAACTACATTATAATGATATCACAAGAAAGAAAGTTA-ATGATTGATAATGATAATGATTATGATTATGATATCGAAATAGTGAATCACGCTTTGGAGCTCCCACTTCATTGGAGGACTACAAGAACAGAAGCTAAGTGGTTCATCGACGCGTATGAGAAAAAACAAGACATGAATCCTATTTTGCTTGAGTTTGCTAAACTCGATTTCAACATGATACAATCAACACATCATGACGATCTAAAACAT 2519458

HSP 3 Score: 172.859 bits (93), Expect = 1.543e-40
Identity = 120/133 (90.23%), Postives = 120/133 (90.23%), Query Frame = 1

Query:     1350 GGGT-GATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAATTATTCTTGTGCATGCTTATTT 1481
                |||| |||||||||| |  |||  | |||||||||||||||||||||| |||||||||||||||| |  ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct:  2530195 GGGTCGATATGTGTAAAAGTTTCTTGCAAGAGGCAAAATGGTACTATAGTGGATACACACCAACAATGGAAGAATATATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT 2530327

HSP 4 Score: 121.153 bits (65), Expect = 5.668e-25
Identity = 119/145 (82.07%), Postives = 119/145 (82.07%), Query Frame = 1

Query:     1207 AGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCACTAGATGTATTAAAAGAAAAACACTT-TG--TCAACATTGAATGCCTCAAGAAAACGT 1348
                ||||||||| |  || |  |||| || |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| | | || ||||||| |||  ||||| | |   |||||||| ||| ||| ||||||||||
Sbjct:  2520436 AGATGGGATATGGAAATGATAAATGAGTTACCAGAATATATGAAGATGCCTTATATTGTTTTACACAATACCATTAATGAAATGGTATTTGAGGTATTAAGAGACCAACACATCTCCATCAACATTCAATACCTTAAGAAAACGT 2520580

[Close]

BLAST of MK614217.1 vs. Genbank
Match Name: AGQN03003403.1
Description: Cannabis sativa cultivar Purple Kush 003407F, whole genome shotgun sequence

HSP 1 Score: 248.571 bits (134), Expect = 2.492e-63
Identity = 324/414 (78.26%), Postives = 324/414 (78.26%), Query Frame = 1

Query:      582 AGAAATTTTTAAT-ATATTCAAAGACATGAG-T-GGAAAATTTAAAGCAATCATAAATGATGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAAC-CAAGTGTCTCGAAAATTACATGATGAT-A-A-CAGAGGAAAACAAATTAGATGA-TGACGATGATCATAATAAT-ATTATTGTA-GTAATTAG--A--CATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACAT 981
                ||| ||||||||| || || || |||  ||| | |||||| | ||| | | ||| | |  |||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| || || || |||| |||  |||||||||| ||| | |||  | || ||||| || || | | || | ||||  || ||| |||| |||  ||||| || || || |||||  ||   || |||  |  || || || ||||| ||||||||| |||||||| ||||||| || || |||||||| ||||| |  || ||||||| |||||| |||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||  ||||| || ||||||||||||
Sbjct:    17986 AGAGATTTTTAATCAT-TTTAAGGAC--GAGATAGGAAAAATCAAAACGAACATGATTAGTGATGATATTATGGAAGTATTGGCCTTATATGAAGCTTCATTCTATGAGAAAAAAGGCGAAAGTATTTTAGAAGAAGTTAGAATTTTCACAACTCAA-TATCTAAAGAACTACATTATAATGATATCACAAGAAAGAAAGTTA-ATGATTGATAATGATAATGATTATGATTATGATATCGAAATAGTGAATCACGCTTTGGAGCTCCCACTTCATCGGAGGACTACAAGAACAGAAGCTAAGTGGTTCATCGACGCGTATGAGAAAAAACAAGACATGAATCCTATTTTGCTTGAGTTTGCTAAACTCGATTTCAACATGATACAATCAACACATCATGATGATCTAAAACAT 18394

HSP 2 Score: 178.399 bits (96), Expect = 3.316e-42
Identity = 121/133 (90.98%), Postives = 121/133 (90.98%), Query Frame = 1

Query:     1350 GGGT-GATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAATTATTCTTGTGCATGCTTATTT 1481
                |||| |||||||||| |  |||  | |||||||||||||||||||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct:    36055 GGGTCGATATGTGTAAAAGTTTCTTGCAAGAGGCAAAATGGTACTATAGTGGATACACACCAACATTGGAAGAATATATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT 36187

HSP 3 Score: 119.306 bits (64), Expect = 2.038e-24
Identity = 118/144 (81.94%), Postives = 118/144 (81.94%), Query Frame = 1

Query:     1207 AGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCACTAGATGTATTAAAAGAAAAACACTT-TG--TCAACATTGAATGCCTCAAGAAAACG 1347
                ||||||||| |  || |  |||| || |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| | | || ||||||| |||  ||||| | |   |||||||| ||| ||| |||||||||
Sbjct:    19312 AGATGGGATATGGAAATGATAAATGAGTTACCAGAATATATGAAGATGCCTTATATTGTTTTACACAATACCATTAATGAAATGGTATTTGAGGTATTAAGAGACCAACACATCTCCATCAACATTCAATACCTTAAGAAAACG 19455


Match Name	Summary
CM010790.2	E-Value: 1.833e-99, PID: 90.28 Description: Cannabis sativa cultivar Purple Kush chromosome 1, whole genome shotgun sequence [more]
AGQN03003403.1	E-Value: 2.492e-63, PID: 78.26 Description: Cannabis sativa cultivar Purple Kush 003407F, whole genome shotgun sequence [more]

blastn of TPS CDS against pkv5 mRNA

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 mRNA
Display provided by the neXtProt Feature Viewer

Show Results Table

[Close]

BLAST of MK614217.1 vs. Genbank
Match Name: PKGMv1-70835_t
Description: No definition line

HSP 1 Score: 147.006 bits (79), Expect = 1.234e-33
Identity = 198/254 (77.95%), Postives = 198/254 (77.95%), Query Frame = 1

Query:      639 TGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAAC-CAAGTGTCTCGAAAATTACATGATGAT-A-A-CAGAGGAAAACAAATTAGATGA-TGACGATGATCATAATAAT-ATTATTGTA-GTAATTAG--A--CATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGA 881
                |||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| || || || |||| |||  |||||||||| ||| | |||  | || ||||| || || | | || | ||||  || ||| |||| |||  ||||| || || || |||||  ||   || |||  |  || || || ||||| |||||||||||||||||| ||||||| || || |||||||| |||||
Sbjct:        9 TGATGATATTATGGAAGTATTGGCCTTATATGAAGCTTCATTCTATGAGAAAAAAGGCGAAAGTATTTTAGAAGAAGTTAGAATTTTCACAACTCAA-TATCTAAAGAACTACATTATAATGATATCACAAGAAAGAAAGTTA-ATGATTGATAATGATAATGATTATGATTATGATATCGAAATAGTGAATCACGCTTTGGAGCTCCCACTTCATTGGAGGACTACAAGAACAGAAGCTAAGTGGTTCATCGA 260


Match Name	Summary
PKGMv1-70835_t	E-Value: 1.234e-33, PID: 77.95 Description: No definition line [more]

blastn of TPS CDS against cs10 genome

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 genome
Display provided by the neXtProt Feature Viewer

Show Results Table

[Close]

BLAST of MK614217.1 vs. Genbank
Match Name: NC_044374.1
Description: Cannabis sativa chromosome 5, cs10, whole genome shotgun sequence

HSP 1 Score: 374.144 bits (202), Expect = 3.871e-101
Identity = 261/288 (90.62%), Postives = 261/288 (90.62%), Query Frame = 1

Query:      305 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAGATTAACTCTTTAGCCCTACTCGAGCTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAATATTA------CTAACCATAATTATAAT---TTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCAAACATGGCTATGCAGTTCCTCAAG 583
                |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| || |||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||      |||||| ||||||||||   |||||  ||||||||||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct:  2523118 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGCTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAG 2522831

HSP 2 Score: 368.604 bits (199), Expect = 1.801e-99
Identity = 260/288 (90.28%), Postives = 260/288 (90.28%), Query Frame = 1

Query:      305 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAGATTAACTCTTTAGCCCTACTCGAGCTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAATATTA------CTAACCATAATTATAAT---TTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCAAACATGGCTATGCAGTTCCTCAAG 583
                |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||| || |||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||      |||||| ||||||||||   |||||  ||||||||||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct:  2484488 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGGTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAG 2484201

HSP 3 Score: 254.111 bits (137), Expect = 5.262e-65
Identity = 325/414 (78.50%), Postives = 325/414 (78.50%), Query Frame = 1

Query:      582 AGAAATTTTTAAT-ATATTCAAAGACATGAG-T-GGAAAATTTAAAGCAATCATAAATGATGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAAC-CAAGTGTCTCGAAAATTACATGATGAT-A-A-CAGAGGAAAACAAATTAGATGA-TGACGATGATCATAATAAT-ATTATTGTA-GTAATTAG--A--CATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACAT 981
                ||| ||||||||| || || || |||  ||| | |||||| | ||| | | ||| | |  |||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| || || || |||| |||  |||||||||| ||| | |||  | || ||||| || || | | || | ||||  || ||| |||| |||  ||||| || || || |||||  ||   || |||  |  || || || ||||| ||||||||| |||||||| ||||||| || || |||||||| ||||| |  || ||||||| |||||| |||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||  ||||| |||||||||||||||
Sbjct:  2020238 AGAGATTTTTAATCAT-TTTAAGGAC--GAGATAGGAAAAATCAAAACGAACATGATTAGTGATGATATTATGGAAGTATTGGCCTTATATGAAGCTTCATTCTATGAGAAAAAAGGCGAAAGTATTTTAGAAGAAGTTAGAATTTTCACAACTCAA-TATCTAAAGAACTACATTATAATGATATCACAAGAAAGAAAGTTA-ATGATTGATAATGATAATGATTATGATTATGATATCGAAATAGTGAATCACGCTTTGGAGCTCCCACTTCATCGGAGGACTACAAGAACAGAAGCTAAGTGGTTCATCGACGCGTATGAGAAAAAACAAGACATGAATCCTATTTTGCTTGAGTTTGCTAAACTCGATTTCAACATGATACAATCAACACATCATGACGATCTAAAACAT 2020646

HSP 4 Score: 178.399 bits (96), Expect = 3.258e-42
Identity = 121/133 (90.98%), Postives = 121/133 (90.98%), Query Frame = 1

Query:     1350 GGGT-GATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAATTATTCTTGTGCATGCTTATTT 1481
                |||| |||||||||| |  |||  | |||||||||||||||||||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct:  2036269 GGGTCGATATGTGTAAAAGTTTCTTGCAAGAGGCAAAATGGTACTATAGTGGATACACACCAACATTGGAAGAATATATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT 2036401

HSP 5 Score: 119.306 bits (64), Expect = 2.003e-24
Identity = 118/144 (81.94%), Postives = 118/144 (81.94%), Query Frame = 1

Query:     1207 AGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCACTAGATGTATTAAAAGAAAAACACTT-TG--TCAACATTGAATGCCTCAAGAAAACG 1347
                ||||||||| |  || |  |||| || |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| | | || ||||||| |||  ||||| | |   |||||||| ||| ||| |||||||||
Sbjct:  2021626 AGATGGGATATGGAAATGATAAATGAGTTACCAGAATATATGAAGATGCCTTATATTGTTTTACACAATACCATTAATGAAATGGTATTTGAGGTATTAAGAGACCAACACATCTCCATCAACATTCAATACCTTAAGAAAACG 2021769


Match Name	Summary
NC_044374.1	E-Value: 3.871e-101, PID: 90.63 Description: Cannabis sativa chromosome 5, cs10, whole genome shotgun sequence [more]

blastn of TPS CDS against cs10 mRNA

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 mRNA
Display provided by the neXtProt Feature Viewer

Show Results Table

[Close]

BLAST of MK614217.1 vs. Genbank
Match Name: XM_030645191.1
Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716405), mRNA

HSP 1 Score: 1186.67 bits (642), Expect = 0.000e+0
Identity = 1449/1833 (79.05%), Postives = 1449/1833 (79.05%), Query Frame = 1

Query:       96 TTTCACACCAAAAACATCTATTAGT-C--CTATTTCAAAATCAAAATCAAAATCAAAATC-A-A---A-ATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATAATAGTAGCCCTAGCTCTAC---TACTAAATCTTCTATTGTTCGAAGATCGGCCAATTATGAACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAGATTAACTCTTTAGCCCTACTCGAGCTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAA------TATTACTAACCATAATT---ATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCAAACATGGCTATGCAGTTCCTCAAGAAATTTTTAATATATTCAAAGACATGAGTGGAAAATTTAAAGCAATCATAAATGATGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATG--A-GAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAAAATTACATG-A-----TG-ATAAC-AG-A-G-GAAAACAA-ATTAG-ATGATGACGATGATCATAATAATATTA-TT-G-TAGTAATTAGACATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATG---TATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACATTTGTCTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTTTAGGAGAATATCTGCGAGAATATATGTTCTGATTACAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCACTAGATGTATTAAAAGAAAAACACTTTGTCAACATTGAATGCCTCAAGAAAACGTGGGGTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAATTATTCTTGTGCATGCTTATTTCTCTTTTGCAAATCCCATAACTAAAGAGGTTTTGGAAATCTTCCAA---CAAGGT--T-ATCCCACAATAATTCGTCAATC-TGCCATGATCGTACGTTTGGCAAATGATCTAGCAACATCATCTGAGGAATTCGAA-AGAGGTGACTCGCCTAAATCAATTCAATGTTACATGCAAGAACATAACG-TATCTAAAGAGGAAGCTCGTGAATACATTAAGTTTTCAATAAGAGAAACATGGAAGGAGATGAAT-AGTACTTTTAATATTGA-AGATGGAAATTCATCA--TTG-GTTGATGATGCCAAAAACTTTGCAAGAATGGGATTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGATAATTTAGCAAAAGAGCGTATTTCAAAATTCATTAT 1871
                ||| ||||||||||| ||||||| | |  ||||||||||| |||||||||| |  ||||| | |   | ||||||||||||||||||||| |||||||||||||||    |||  | |||||| |||||   |||| ||  |  || || ||||||||| ||||| |||| |||||||||||||||||| ||||  |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| || |||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||      ||||||||||| |||||   ||||||||||  ||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||   ||||| || | ||| || ||||||||| ||  | | |  | |||||||||||||||| |||||   ||||||||||||||||||||||  | |||| |||   |||  || ||||||||||| ||  ||||  |||| || |||||  |||| |||||| |     || | ||  || | | ||||| || ||||  || | || ||| || ||| ||||| || || | || ||||||  || || || |||||||| ||||||||||| |   ||||| |||| || | |||||| || || |   |||| ||||||| |||||| |||||||| |||||| | |||||||| ||| ||||||| || || || |||||||  || ||||| ||| || ||||||| || |||||||||||  ||  |||||| || |  ||| |||||||||  |||||||| |||||||    ||| |||||| |||||||| ||| ||| |||  ||| |||||||| ||||| ||||||  ||| ||| ||| ||| || || |||||||| |||||||| |||||||| || ||||| || || |||||||||||||||||| ||| |||||| ||||||||||| ||| || | || || ||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| ||||   | |||||||||  | || || |||||||||||||||||| ||| |||||| ||||||  ||| | |||| || || | ||||||| ||||||||||| |||| |||||||  |||||||||  ||||||||| |||    |||||| ||||| |||||||| || | |||||| ||||||||||||| | |||  ||||||| ||||| ||| | |  ||| ||| ||| |||   |||  |  | ||||||  ||||||   ||| | |||  ||||   | |  | ||| ||||| ||| |||||| || || ||||| ||| ||||| |||   |||||||| ||||||||||||||| | ||  |||| | || |  |||| |||||||||||| |||| ||||| |  ||||| |||||||||||||| |||||| || |   | || || || || ||   || ||  |  ||  ||||| | |  ||||||  | || ||||  | | |||| || ||| |  |||||||||||||| |||||||  ||| |||| ||||||| ||||||||||  || |||||
Sbjct:      139 TTTTACACCAAAAACTTCTATTATTACTTCTATTTCAAAACCAAAATCAAACTTGAAATCGAGATCGAGATCAAGTACTTGCTACCCCATACAATGTACTGTGGTC---GATA--A-CCCTAGTTCTACGATTACT-AA--TAATAGTGATCGAAGATCAGCCAACTATGGACCTCCGATTTGGTCTTTTGATTTTATTCAATCTCTTCCAATCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGCTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAGAAATTTTTAATGCTTTCAAGGATAAGAGAGGGAAATTTAAAACATGCTTGA--G-TGATGATATTATGGGAGTATTGTGTTTATATGAAGCTTCATTCTATGCTATGAAACATGA--AAAT-ATTTTGGAGGAAGCAAGAATTTTTTCAACTAAATGTCTTAAAAAATACATGGAGAAAATGGAGAATGAGGAAGAGAAAAAAATATTATTATTA-GATGATAATAATATTAATAGTAATTTGCTATTAATTAATCACGCTTTCGAGCTTCCGCTTCATTGGAGAATAACAAGATCGGAAGCTAGGTGGTTCATTGACGAAATATATGAGAAAAAACAAGACATGAATTCGACTTTGTTCGAGTTTGCGAAATTAGATTTTAATATAGTGCAATCAACACACCAAGAAGATTTACAACATTTATCGAGGTGGTGGAGGGATTGTAAACTTGGTGGGAAATTGAATTTTGCTAGAGATAGATTGATGGAAGCTTTCTTATGGGATGTTGGACTAAAATTCGAGGGAGAATTCAGCTATTTTAGAAGAATAAATGCAAGATTATTTGTGCTTATAACAATAATTGATGATATTTATGATGTATATGGAACTTTGGAGGAATTAGAGCTTTTCACTAGTGCTGTTGAAAGATGGGATGTGAAATTAATCAATGAGTTACCAGATTACATGAAGATGCCTTTCTTTGTTTTACACAATACCATAAATGAGATGGGGTTCGATGTATTAGTACAACAAAACTTTGTCAACATTGAATACCTTAAGAAATCGTGGGTAGATTTATGTAAATGTTATTTACAAGAAGCAAAATGGTATTATAGTGGATACCAACCAACATTGGAAGAATACACTGAGTTGGGTTGGCTTTCAATAGGAGCATCAGTAATTCTTATGCATGCTTATTTTTGTTTCACAAATCCTATAACAAAACAAGACTTGAAAAGCTTGCAATTACAACATCATTATCCCAACATAATTAAACAAGCATGCT-TGATTACAAGGCTTGCAGATGATTTAGGAACATCTTCGGATGAATT-GAATAGAGGCGACGTTCCTAAATCGATTCAATGTTACATGTACGATAATAATGCTACCG-AAGACGAAGCTCGTGAACACATCAAGTTCTTGATAAGTGAAACATGGAAGGATATGAATAAGAAAGATGAAGAT-GAGAGTTGTTTAT-CAGAAAATTTTGTTGAAGTTTGCAAAAATATGGCTAGAACAGCACTATTCATATATGAGAATGGAGATGGACATGGTTCTCAGAATAGTTTATCAAAAGAACGTATTTCAACCTTGATTAT 1950

[Close]

BLAST of MK614217.1 vs. Genbank
Match Name: XM_030644766.1
Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716063), transcript variant X1, mRNA

HSP 1 Score: 1173.74 bits (635), Expect = 0.000e+0
Identity = 1444/1829 (78.95%), Postives = 1444/1829 (78.95%), Query Frame = 1

Query:      100 ACACCAAAAACATCTATTAGT-C--CTATTTCAAAATCAAAATCAAAATCAAAATC-A-A---A-ATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATAATAGTAGCCCTAGCTCTAC---TACTAAATCTTCTATTGTTCGAAGATCGGCCAATTATGAACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAGATTAACTCTTTAGCCCTACTCGAGCTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAA------TATTACTAACCATAATT---ATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCAAACATGGCTATGCAGTTCCTCAAGAAATTTTTAATATATTCAAAGACATGAGTGGAAAATTTAAAGCAATCATAAATGATGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATG--A-GAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAAAATTACATG-A-----TG-ATAAC-AG-A-G-GAAAACAA-ATTAG-ATGATGACGATGATCATAATAATATTA-TT-G-TAGTAATTAGACATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATG---TATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACATTTGTCTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTTTAGGAGAATATCTGCGAGAATATATGTTCTGATTACAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCACTAGATGTATTAAAAGAAAAACACTTTGTCAACATTGAATGCCTCAAGAAAACGTGGGGTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAATTATTCTTGTGCATGCTTATTTCTCTTTTGCAAATCCCATAACTAAAGAGGTTTTGGAAA-T---C--TTCCAACAAGGTTATCCCACAATAATTCGTCAATC-TGCCATGATCGTACGTTTGGCAAATGATCTAGCAACATCATCTGAGGAATTCGAA-AGAGGTGACTCGCCTAAATCAATTCAATGTTACATGCAAGAACATAACG-TATCTAAAGAGGAAGCTCGTGAATACATTAAGTTTTCAATAAGAGAAACATGGAAGGAGATGAAT-AGTACTTTTAATATTGA-AGATGGAAATTCATCA--TTG-GTTGATGATGCCAAAAACTTTGCAAGAATGGGATTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGATAATTTAGCAAAAGAGCGTATTTCAAAATTCATTAT 1871
                ||||||||||| ||||||| | |  ||||||||||| |||||||||| |  ||||| | |   | ||||||||||||||||||||| |||||||||||||||    |||  | |||||| |||||   |||| ||  |  || || ||||||||| ||||| |||| |||||| ||||||||||| ||||  |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||| || |||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||      ||||||||||| |||||   ||||||||||  ||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||   ||||| || | ||| || ||||||||| ||  | | |  | |||||||||||||||| |||||   ||||||||||||||||||||||  | |||| |||   |||  || ||||||||||| ||  ||||  |||| || |||||  |||| |||||| |     || | ||  || | | ||||| || ||||  || | || ||| || ||| ||||| || || | || ||||||  || || || |||||||| ||||||||||| |   ||||| |||| || | |||||| || || |   |||| ||||||| |||||| |||||||| |||||| | |||||||| ||| ||||||| || || || |||||||  || ||||| ||| || ||||||| || |||||||||||  ||  |||||| || |  ||| |||||||||  |||||||| |||||||    ||| |||||| |||||||| ||| ||| |||  ||| |||||||| ||||| ||||||  ||| ||| ||| ||| || || |||||||| |||||||| |||||||| || ||||| || || |||||||||||||||||| ||| |||||| ||||||||||| ||| || | || || ||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| ||||   | |||||||||  | || || |||||||||||||||||| ||| |||||| ||||||  ||| | |||| || || | ||||||| ||||||||||| |||| |||||||  |||||||||  ||||||||| |||    |||||| ||||| |||||||| || | |||||| ||||||||||||| | |||  ||||||| ||||| ||| | |  ||| ||| |   |  || |||||   ||||||||  ||||||   ||| | |||  ||||   | |  | ||| ||||| ||| |||||| || || ||||| ||| ||||| |||   |||||||| ||||||||||||||| | ||  |||| | || |  |||| |||||||||||| |||| ||||| |  ||||| |||||||||||||| |||||| || |   | || || || || ||   || ||  |  ||  ||||| | |  ||||||  | || ||||  | | |||| || ||| |  |||||||||||||| |||||||  ||| |||| ||||||| ||||||||||  || |||||
Sbjct:      133 ACACCAAAAACTTCTATTATTACTTCTATTTCAAAACCAAAATCAAACTTGAAATCGAGATCGAGATCAAGTACTTGCTACCCCATACAATGTACTGTGGTC---GATA--A-CCCTAGTTCTACGATTACT-AA--TAATAGTGATCGAAGATCAGCCAACTATGGACCTCCCATTTGGTCTTTTGATTTTATTCAATCTCTTCCAATCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGGTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAGAAATTTTTAATGCTTTCAAGGATAAGAGAGGGAAATTTAAAACATGCTTGA--G-TGATGATATTATGGGAGTATTGTGTTTATATGAAGCTTCATTCTATGCTATGAAACATGA--AAAT-ATTTTGGAGGAAGCAAGAATTTTTTCAACTAAATGTCTTAAAAAATACATGGAGAAAATGGAGAATGAGGAAGAGAAAAAAATATTATTATTA-GATGATAATAATATTAATAGTAATTTGCTATTAATTAATCACGCTTTCGAGCTTCCGCTTCATTGGAGAATAACAAGATCGGAAGCTAGGTGGTTCATTGACGAAATATATGAGAAAAAACAAGACATGAATTCGACTTTGTTCGAGTTTGCGAAATTAGATTTTAATATAGTGCAATCAACACACCAAGAAGATTTACAACATTTATCGAGGTGGTGGAGGGATTGTAAACTTGGTGGGAAATTGAATTTTGCTAGAGATAGATTGATGGAAGCTTTCTTATGGGATGTTGGACTAAAATTCGAGGGAGAATTCAGCTATTTTAGAAGAATAAATGCAAGATTATTTGTGCTTATAACAATAATTGATGATATTTATGATGTATATGGAACTTTGGAGGAATTAGAGCTTTTCACTAGTGCTGTTGAAAGATGGGATGTGAAATTAATCAATGAGTTACCAGATTACATGAAGATGCCTTTCTTTGTTTTACACAATACCATAAATGAGATGGGGTTCGATGTATTAGTACAACAAAACTTTGTCAACATTGAATACCTTAAGAAATCGTGGGTAGATTTATGTAAATGTTATTTACAAGAAGCAAAATGGTATTATAGTGGATACCAACCAACATTGGAAGAATACACTGAGTTGGGTTGGCTTTCAATAGGAGCATCAGTAATTCTTATGCATGCTTATTTTTGTTTCACAAATCCTATAACAAAACAAGACTTGAAAAGTTTGCAATTGCAACATCATTATCCCAACATAATTAAACAAGCATGCT-TGATTACAAGGCTTGCAGATGATTTAGGAACATCTTCGGATGAATT-GAATAGAGGCGACGTTCCTAAATCGATTCAATGTTACATGTACGATAATAATGCTACCG-AAGACGAAGCTCGTGAACACATCAAGTTCTTGATAAGTGAAACATGGAAGGATATGAATAAGAAAGATGAAGAT-GAGAGTTGTTTAT-CAGAAAATTTTGTTGAAGTTTGCAAAAATATGGCTAGAACAGCACTATTCATATATGAGAATGGAGATGGACATGGTTCTCAGAATAGTTTATCAAAAGAACGTATTTCAACCTTGATTAT 1940

[Close]

BLAST of MK614217.1 vs. Genbank
Match Name: XM_030645439.1
Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716605), mRNA

HSP 1 Score: 1090.64 bits (590), Expect = 0.000e+0
Identity = 1305/1645 (79.33%), Postives = 1305/1645 (79.33%), Query Frame = 1

Query:      228 TATTGTTCGAAGATCGGCCAATTATGA-ACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGC-AATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGA-ATGGAGATTAACTCTTTAGCCCTACTCGAGCTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAATATTACTAACCATAATTATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCAAACATGGCTATGCAGTTCCTCAAGAAATTTTTAATATATTCAAAGACATGAG-TGGAAAATTTAAAGCAA-TCATAAATGATGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAAAA-T-TAC-ATGATGATAACAGAGGAAAACAAATTAGATGA-TGACGATGATCATAATAATATTATTGTAGTAATTAGACATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACAT-TTGTCTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTTTAGGAGAATATCTGCGAGAATATATGTTCTGATTACAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCACTAGATGTATTAAAAGA--AAAACACTTT-GTCAACATTGAATGCCTCAAGAAAACGTGGGGTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAATTATTCTTGTGCATGCTTATTTCTCTTTT-GCAAATC-----C---CA-T-A-----ACTAAAGAGGTTTTGGAAATCTTCCAACAAGGTTATC--CCA-CAATAATTCGTCAATCTGCCATGATCGTACGTTTGGCAAATGATCTAGCAACATCATCTGAGGAATTCGAAAGAGGTGACTCGCCTAAATCAATTCAATGTTACATGCAAGAACATAACGTATCTAAAGAGGAAGCTCGTGAATACATTAAGTTTTCAATAAGAGAAACATGGAAGGAGATGAATAGTACTTTTAATATTGAAGATGGAAATTCATCATTGGTTGATGATGCCAAAAACTTTGC-AAGAATGGGATTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGATAAT 1839
                ||||| |||| |||| ||||| | |||  ||||| ||||||||||| ||||| |||||||||||| |||  ||||||||||||||| | |||||||| | | | ||| || ||  ||| ||| ||||||| |||| |  || || ||||| |  ||||||||||| | ||| || || || |||||||||||||| |||||||||||||| | |||| |||||||||||||  |||||||||| ||||||||      |  ||| | |   | |||||  | |  || |||||||||||||||  ||||||||||  ||||||||||||||||  |||||||||||||||| |||||||| |||||||||   || || |||  ||| | |||||  | ||  ||  |||||||| | ||||||| |||||| |||| || ||||| |||||||| || ||||||||||| || ||||| || ||  ||||||||||  |||||||||| || |||||| |||| |  || || |||||| ||||| |||| || ||| |||| |||  ||||| || || ||  ||| | |||| | |  ||||| |||||||| ||||||||| |||||||  ||||||| || || |||||||| || || | ||| | ||||| |||||| |||||| |||  ||||||||||| || ||||| ||||||||||| ||||||||||  ||||| || |||||||||||| |  || ||||||||||| ||||||||||| ||||| ||| |||||||||  |||||| | |||||||  ||||| ||||||||| ||||| ||||||||||| || | |||||||| ||||| | || | |||| | | ||| ||  ||  | ||| | || |||||||||||||||||||| |||||||| || |||||||||||||||||    | |||||||||||||||||| ||| |  |||| || |||||||| || ||||||||||||| ||||||||||||||||||||| ||||| |||| | | || || |||| |||  || | | ||   |||||||| ||| ||| |||||||||||||  |||||||||| |  |||  | |||||||||||||||||||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||   ||||||      |   || | |     ||||||||| |||| |||  |||  || | ||||||   ||  | || ||||||||   |||||| ||  |||| ||  ||||||| |||||||||||||| ||||||||  ||||||||||  | || | ||||||||||||||||||||||||| | || |||||| ||||||||||||||||| |  ||||||||| |||||  ||| |||||||||||||||||| |  | ||   ||| |  ||  || | | ||||||  ||| ||||| | ||||||||| |||| ||||||| || || ||||||||||| ||||| ||||||||||||||||||
Sbjct:      239 TATTGATCGACGATCTGCCAACTTTGAGCCCTCC-ATTTGGTCTTTTGATTATATTCAATCTCTTACAAGTCAATATAAGGGAGAACCTTATACAAGTCGAGTGAAAAAACTT-GAGAGAGATGTGAAAAAGATGTTAGTT-GAGATGGA-A--AACTCTTTAGCTCAACTTGAACTCATTGATACATTGCAAAGACTTGGAATATCTTACCGTTTTGAGAATGAAATAAATTCTATTTTGAACAAAAAATA------T-GTTA-A-T---ATTAATA--A-T--CC-TAATTATAATTTATATGCCATTGCTCTTCAATTTAGGCTTCTACGTCAACATGGCTATGCAGTACCTCAAGAGATTTTTAATCAGTTGAAGGAC--GAGATAGAAAACATCAAAAAACACATAAATGGTAATGATATCATGGGAGTATTAGCCTTATACGAAGCTTCTTTTTATGAGAAAAAAGGCGAAAGTATTTTAAAGGAAGCTAGAATTTTCACAACTAAATGTCTCAAAAACTACACTATAATGATATCAGAGCAAAAAAAGTTA-ATGATTGATAATGATTATGATTATGATATCGAAGTAGTGAATCATGCCTTAGAGCTCCCACTTCATCGGAGGACCACAAGAACAGAAGCAAAGTGGTTCATTGACGCATATGCGAAAAAACAAGACATGAATCCTATGTTGCTTGAGTTAGCCAAACTCGATTTCAACATAGTACAATCAACACATCATGAAGATCTAAAACATATATTC-AGGTGGTGGAGACATACTAAACTTGGAGAGAAATTGAATTTTGCAAGAGATCGATTGATGGAATGTTTCTTATGGAATATTGGAATAAGATTTGAGTCAAAATTCAGCTATTTTAGAACAAAAACTGCCAAATTATTTGAGCTAGTAACATTTATAGATGATATATATGATGTTTATGGAACATTGGATGAATTAGAGCTTTTCACCAAAGCTGTTGAGAGATGGGATGTGAAAATGATAAATGAGTTACCAGAATACATGAAGATGCCTTATCTTGTTTTACACAATACCATAAATGATATGGTATTTGAGGTGTTAAGAGACCAAGAAATTTCCATCAACATTCAATACCTTAAGAAAACGTGGGTCGATATGTGTAAAAGTTTCTTGCAAGAGGCAAAATGGTACTATAGTGGATACACACCAACATTGGAAGAATATATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT-TTTTCACGCAAATAATAATCGTACAATTACAAATACTAAAGAGATTTTCGAATGCTTGGAATATGGTTATTATCCTGCCATTATTCGTCACAGTGCCATAATATTACGATTTACAAATGACCTAGCAACATCATCGGAGGAATTGAAAAGAGGTGATGCTCCGACATCAATTCAATGTTACATGCAAGAAAAAAATGTATCTGAAGAGGAAGCTCGTGAACATGTTAAGTTTTTAATAAATGAAGCATGGAAGGAGATGAATAATGATGTTGG-ATT-AT-ATCCAA-T-C-TCATTGACTGAAGATGCTACAAACTTTGCTAAGA-TGGGATTTTTCATATATCAACATGGTGATGGTCATAGTTCTCAAGATAAT 1847

[Close]

BLAST of MK614217.1 vs. Genbank
Match Name: XM_030645438.1
Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716604), mRNA

HSP 1 Score: 1040.78 bits (563), Expect = 0.000e+0
Identity = 1301/1652 (78.75%), Postives = 1301/1652 (78.75%), Query Frame = 1

Query:      228 TATTGTTCGAAGATCGGCCAATTATGA-ACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGC-AATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGA-ATGGAGATTAACTCTTTAGCCCTACTCGAGCTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAATATTACTAACCATAATTATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCAAACATGGCTATGCAGTTCCTCAAGAAATTTTTAAT-ATATTCAAAGACATGAG-T-GGAAAATTTAAAGCAATCATAAATGATGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAAC-CAAGTGTCTCGAAAATTAC---ATGATGATAACAGAGGAAAACAAATTAGATGA-TGACGATGATCATAATAAT-ATTATTGTAGT-AATTA--G-A-CATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACAT-TTGTCTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTTTAGGAGAATATCTGCGAGAATATATGTTCTGATTACAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCACTAGATGTATTAAAAGAAAAACACTT-TG--TCAACATTGAATGCCTCAAGAAAACGTGGGGTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAATTATTCTTGTGCATGCTTATTTCTCTTTTGCAAAT------C-C-CA-TAAC------TAAAGAGGTTTTGGAAATCTTCCAACAAGG---TTATCCCACAATAATTCGTCAATCTGCCATGATCGTACGTTTGGCAAATGATCTAGCAACATCATCTGAGGAATTCGAAAGAGGTGACTCGCCTAAATCAATTCAATGTTACATGCAAGAACATAACGTATCTAAAGAGGAAGCTCGTGAATACATTAAGTTTTCAATAAGAGAAACATGGAAGGAGATGAATAGTACTTTTAATATTGAAGATGGAAATTCATCATTGGTTGATGATGCCAAAAACTTTGC-AAGAATGGGATTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGATAAT 1839
                ||||| |||| |||| ||||| | |||  ||||| ||||||||||| ||||| |||||||||||| ||| ||||||||||| |||||| |||||| | | | | ||| || ||  ||| ||| ||||||| |||| |  || || ||||| |  || ||||||   | ||| || || || || ||||||||||| |||||| ||||||||| |||| || |||||||||| |||||||||||   | || | | | ||| | |||| | |||| | |   || |  || || ||||||||||   || |||||| |||||||||||||||||  |||||||||||||||| |||||||| ||||||||| || || || |||  ||| | |||||| | ||| | | ||| | |  |||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| || || || |||| |||  |||||||||| ||| | |||  | || |||   || |||||| || | ||||  || ||| |||| |||  ||||| || || || |||||  ||   || ||  | | || || || ||||| ||||||||| |||||||| ||||||| || || |||||||| ||||| |  || ||||||| |||||| |||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||  ||||| ||||||||||||||| |  || ||||||||||| ||||||||||| || || ||  |||||||||  |||||| | |||||||  ||||| ||||||||  ||||| |||||||||||||| | ||||| || ||||| | || | |||| | | ||| ||  || || ||| |||| |||||||||||||||||||| |||||||| || |||||||||||||||||    | | |||||||||||||| |  || |  |||| || |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| | | || ||||||| |||  ||||| | |   |||||||| ||| ||| |||||||||||||  ||||||||||||  |||| |||||||||||||||||||||||| |||||| ||||||||| |  ||||||| ||| ||||||||||||||||||| ||||||||  || |  |||||||||||||||| |||  |||||||      | | || | ||      ||||||| |||| |||  |||  |||| ||   ||||||| | |||||||||||   |||||| ||  ||||  |  ||||||| |||||||||||||| |||||| |  ||||||||||  | || | ||||||||||||||| ||||||||| | || |||||| | ||| ||||||||||| | |||||||||| |||||| |||| |||||| |||||||||| |  | ||   ||| |  ||  || | | |||||| |||| ||||| | ||| ||||| |||| ||||||| || |||||||| ||||| ||||| ||||||||||||||||||
Sbjct:      207 TATTGATCGACGATCTGCCAACTTTGAGCCCTCC-ATTTGGTCTTTTGATTATATTCAATCTCTTACAAGCCAATATAAGGAAGAATCTTATACAGGTCGAGTCAAAGAA-TTGGAGATAGATGTGAAAAAGATGTTAATT-GAGATGGA-A--AATTCTTTAATTCAACTTGAACTCATTGACACATTGCAAAGACTTGGAGTATCTTATCGTTTTGAGGATGAAATAAATACTATTTTGAA---AGAA-A-A-ATATATTAATATGATCAAT-A-A-CCCT-A--ATTATAATAATTTATATGTCACTGCTCTTGAATTTAGGCTTCTACGTCAACATGGCTATGCAGTACCTCAAGAGATTTTTAATCAT-TTTAAGGAC--GAGATAGGAAAAATCAAAACGAACATGATTAGTGATGATATTATGGAAGTATTGGCCTTATATGAAGCTTCATTCTATGAGAAAAAAGGCGAAAGTATTTTAGAAGAAGTTAGAATTTTCACAACTCAA-TATCTAAAGAACTACATTATAATGATATCACAAGAAAGAAAGTTA-ATGATTGATAATGATAATGATTATGATTATGATATCGAAATAGTGAATCACGCTTTGGAGCTCCCACTTCATCGGAGGACTACAAGAACAGAAGCTAAGTGGTTCATCGACGCGTATGAGAAAAAACAAGACATGAATCCTATTTTGCTTGAGTTTGCTAAACTCGATTTCAACATGATACAATCAACACATCATGACGATCTAAAACATATATTC-AGGTGGTGGAGGCATACTAAACTTGGGGAGAATTTGAATTTTGCAAGAGATCGATTGATGGAATGTTTCTTATGGAAAATTGGAATAAGATTTGAGCCAAAATTCAGTTATTTTAGAATAACAACTGCCAAATTATTTGAGCTAATAACAGTAATTGATGATATATATGATGTTTATGGAACATTGGATGAATTAGAGCTTTTCACCAAAGCTATTGAGAGATGGGATATGGAAATGATAAATGAGTTACCAGAATATATGAAGATGCCTTATATTGTTTTACACAATACCATTAATGAAATGGTATTTGAGGTATTAAGAGACCAACACATCTCCATCAACATTCAATACCTTAAGAAAACGTGGGTAGATATGTGTAGAGGTTTTTTACAAGAGGCAAAATGGTACTATAGTGGATATACACCAACACTAGAAGAATATATTAAAAATGGTTGGATTTCAGTGGGAGCACCGGTTCTAATTGTGCATGCTTATTTTTCTCATGCAAATTATAATCACACAGTTACAAGTAGTAAAGAGATTTTCGAATGCTTTGAACATGGTTATTATCCCGCCATAATTCGTCATAGTGCCATAATATTACGACTTACAAATGACCTAGCAACATCATCGGAGGAACTGAAAAGAGGTGATGCTCCGACATCAATTCAATGTTATATGCAAGAAAAAAAAGTATCTGAGGAGAAAGCTCGTGAACATATTAAGTTTTTAATAAGTGAAATATGGAAAGAGATGAATAATGATGTTGG-ATT-AT-ATCCAA-T-C-TCATTGATTGAAGATGCTACAAATTTTGCTAAGA-TGGGATTTTTCATGTATCAGCATGGTGATGGTCATAGTTCTCAAGATAAT 1827

[Close]

BLAST of MK614217.1 vs. Genbank
Match Name: XM_030644767.1
Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716063), transcript variant X2, mRNA

HSP 1 Score: 966.918 bits (523), Expect = 0.000e+0
Identity = 1043/1288 (80.98%), Postives = 1043/1288 (80.98%), Query Frame = 1

Query:      100 ACACCAAAAACATCTATTAGT-C--CTATTTCAAAATCAAAATCAAAATCAAAATC-A-A---A-ATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATAATAGTAGCCCTAGCTCTAC---TACTAAATCTTCTATTGTTCGAAGATCGGCCAATTATGAACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAGATTAACTCTTTAGCCCTACTCGAGCTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAA------TATTACTAACCATAATT---ATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCAAACATGGCTATGCAGTTCCTCAAGAAATTTTTAATATATTCAAAGACATGAGTGGAAAATTTAAAGCAATCATAAATGATGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATG--A-GAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAAAATTACATG-A-----TG-ATAAC-AG-A-G-GAAAACAA-ATTAG-ATGATGACGATGATCATAATAATATTA-TT-G-TAGTAATTAGACATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATG---TATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACATTTGTCTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTTTAGGAGAATATCTGCGAGAATATATGTTCTGATTACAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCACTAGATGTATTAAAAGAAAAACACTTTGTCAACATTGAATGCCTCAAGAAA 1344
                ||||||||||| ||||||| | |  ||||||||||| |||||||||| |  ||||| | |   | ||||||||||||||||||||| |||||||||||||||    |||  | |||||| |||||   |||| ||  |  || || ||||||||| ||||| |||| |||||| ||||||||||| ||||  |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||| || |||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||      ||||||||||| |||||   ||||||||||  ||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||   ||||| || | ||| || ||||||||| ||  | | |  | |||||||||||||||| |||||   ||||||||||||||||||||||  | |||| |||   |||  || ||||||||||| ||  ||||  |||| || |||||  |||| |||||| |     || | ||  || | | ||||| || ||||  || | || ||| || ||| ||||| || || | || ||||||  || || || |||||||| ||||||||||| |   ||||| |||| || | |||||| || || |   |||| ||||||| |||||| |||||||| |||||| | |||||||| ||| ||||||| || || || |||||||  || ||||| ||| || ||||||| || |||||||||||  ||  |||||| || |  ||| |||||||||  |||||||| |||||||    ||| |||||| |||||||| ||| ||| |||  ||| |||||||| ||||| ||||||  ||| ||| ||| ||| || || |||||||| |||||||| |||||||| || ||||| || || |||||||||||||||||| ||| |||||| ||||||||||| ||| || | || || ||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| ||||   | |||||||||  | || || |||||||||||||||||| ||| ||||||
Sbjct:      133 ACACCAAAAACTTCTATTATTACTTCTATTTCAAAACCAAAATCAAACTTGAAATCGAGATCGAGATCAAGTACTTGCTACCCCATACAATGTACTGTGGTC---GATA--A-CCCTAGTTCTACGATTACT-AA--TAATAGTGATCGAAGATCAGCCAACTATGGACCTCCCATTTGGTCTTTTGATTTTATTCAATCTCTTCCAATCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGGTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAGAAATTTTTAATGCTTTCAAGGATAAGAGAGGGAAATTTAAAACATGCTTGA--G-TGATGATATTATGGGAGTATTGTGTTTATATGAAGCTTCATTCTATGCTATGAAACATGA--AAAT-ATTTTGGAGGAAGCAAGAATTTTTTCAACTAAATGTCTTAAAAAATACATGGAGAAAATGGAGAATGAGGAAGAGAAAAAAATATTATTATTA-GATGATAATAATATTAATAGTAATTTGCTATTAATTAATCACGCTTTCGAGCTTCCGCTTCATTGGAGAATAACAAGATCGGAAGCTAGGTGGTTCATTGACGAAATATATGAGAAAAAACAAGACATGAATTCGACTTTGTTCGAGTTTGCGAAATTAGATTTTAATATAGTGCAATCAACACACCAAGAAGATTTACAACATTTATCGAGGTGGTGGAGGGATTGTAAACTTGGTGGGAAATTGAATTTTGCTAGAGATAGATTGATGGAAGCTTTCTTATGGGATGTTGGACTAAAATTCGAGGGAGAATTCAGCTATTTTAGAAGAATAAATGCAAGATTATTTGTGCTTATAACAATAATTGATGATATTTATGATGTATATGGAACTTTGGAGGAATTAGAGCTTTTCACTAGTGCTGTTGAAAGATGGGATGTGAAATTAATCAATGAGTTACCAGATTACATGAAGATGCCTTTCTTTGTTTTACACAATACCATAAATGAGATGGGGTTCGATGTATTAGTACAACAAAACTTTGTCAACATTGAATACCTTAAGAAA 1404


Match Name	Summary
XM_030645191.1	E-Value: 0.000e+0, PID: 79.05 Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716405), mRNA [more]
XM_030644766.1	E-Value: 0.000e+0, PID: 78.95 Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716063), transcript variant X1, mRNA [more]
XM_030645439.1	E-Value: 0.000e+0, PID: 79.33 Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716605), mRNA [more]
XM_030645438.1	E-Value: 0.000e+0, PID: 78.75 Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716604), mRNA [more]
XM_030644767.1	E-Value: 0.000e+0, PID: 80.98 Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716063), transcript variant X2, mRNA [more]

Interpro result TPS-TSA-THC Csativa

Performed on: 2021-09-02
Display provided by the neXtProt Feature Viewer


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 33..50
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 51..81
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..32
None	No IPR available	TMHMM	TMhelix		coord: 33..50
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..28
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 29..49
None	No IPR available	TMHMM	TMhelix		coord: 6..28
None	No IPR available	COILS	Coil	Coil	coord: 103..123
None	No IPR available	PANTHER	PTHR31225	FAMILY NOT NAMED	coord: 78..628
None	No IPR available	PANTHER	PTHR31225:SF9		coord: 78..628
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 28..40
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..27
None	No IPR available	TMHMM	TMhelix		coord: 5..27
None	No IPR available	COILS	Coil	Coil	coord: 36..40
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 32..47
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..31
None	No IPR available	TMHMM	TMhelix		coord: 7..29
IPR005630	Terpene synthase, metal-binding domain	PFAM	PF03936	Terpene_synth_C	coord: 307..573 e-value: 1.0E-99 score: 333.2
IPR036965	Terpene synthase, N-terminal domain superfamily	GENE3D	1.50.10.130		coord: 125..301 e-value: 9.1E-192 score: 639.9
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10		coord: 88..612 e-value: 9.1E-192 score: 639.9
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 302..627
IPR001906	Terpene synthase, N-terminal domain	PFAM	PF01397	Terpene_synth	coord: 89..256 e-value: 5.5E-48 score: 163.2
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 86..302

Cannabis sativa cultivar Finola ocimene synthase mRNA
complete cds

Reanalysis of 21 trichome RNA-Seq samples, FN-clones109 (TMM50 minvalue)

Reanalysis of 21 trichome RNA-Seq samples, PK-clones109 (TMM50 minvalue)

Interpro result TPS-TSA-THC Csativa

blastn of TPS CDS against cs10 mRNA

blastn of TPS CDS against cs10 genome

blastn of TPS CDS against pkv5 mRNA

blastn of TPS CDS against pkv5 genome

NCBI Download

Sequences

Sequence	ATGCATTATATGGCTGTTCACCAATTTGGTCCATCATTAATATCATCATC ACTACCTTGCATTAGTACTAATAATAATCACTTAATTTGTAAATATTTCA CACCAAAAACATCTATTAGTCCTATTTCAAAATCAAAATCAAAATCAAAA TCAAAATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATAATAG TAGCCCTAGCTCTACTACTAAATCTTCTATTGTTCGAAGATCGGCCAATT ATGAACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAA TATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGT GAAAAGGATGCTCCTTCGAATGGAGATTAACTCTTTAGCCCTACTCGAGC TAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAA ATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAA TATTACTAACCATAATTATAATTTATACCCCATTGCTCTCGAATTTAGGC TTCTACGCAAACATGGCTATGCAGTTCCTCAAGAAATTTTTAATATATTC AAAGACATGAGTGGAAAATTTAAAGCAATCATAAATGATGATGATATTAT GGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAA GCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAAAATTAC ATGATGATAACAGAGGAAAACAAATTAGATGATGACGATGATCATAATAA TATTATTGTAGTAATTAGACATGCGTTAGAGCTTCCACTTCATTGGAGGA CTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAA GATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGT ACAATCAATGCATCAAGACGATCTAAAACATTTGTCTAGGTGGTGGAGTC ATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGG TGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTT TAGGAGAATATCTGCGAGAATATATGTTCTGATTACAATAATCGATGATA TATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTT GTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAA GATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCACTAGATG TATTAAAAGAAAAACACTTTGTCAACATTGAATGCCTCAAGAAAACGTGG GGTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGG ATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAG GAGCACCAATTATTCTTGTGCATGCTTATTTCTCTTTTGCAAATCCCATA ACTAAAGAGGTTTTGGAAATCTTCCAACAAGGTTATCCCACAATAATTCG TCAATCTGCCATGATCGTACGTTTGGCAAATGATCTAGCAACATCATCTG AGGAATTCGAAAGAGGTGACTCGCCTAAATCAATTCAATGTTACATGCAA GAACATAACGTATCTAAAGAGGAAGCTCGTGAATACATTAAGTTTTCAAT AAGAGAAACATGGAAGGAGATGAATAGTACTTTTAATATTGAAGATGGAA ATTCATCATTGGTTGATGATGCCAAAAACTTTGCAAGAATGGGATTATTT ATGTATCAACATGGAGATGGACATAGTTCTCAAGATAATTTAGCAAAAGA GCGTATTTCAAAATTCATTATCAATCCTATAGATATACACGATTCTCTTT CTTTTTGA
Sequence Length	1908
Sequence Checksum	acbd4b7ca14dc4956a67daf21da02256

Sequence

ATGCATTATATGGCTGTTCACCAATTTGGTCCATCATTAATATCATCATC
ACTACCTTGCATTAGTACTAATAATAATCACTTAATTTGTAAATATTTCA
CACCAAAAACATCTATTAGTCCTATTTCAAAATCAAAATCAAAATCAAAA
TCAAAATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATAATAG
TAGCCCTAGCTCTACTACTAAATCTTCTATTGTTCGAAGATCGGCCAATT
ATGAACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAA
TATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGT
GAAAAGGATGCTCCTTCGAATGGAGATTAACTCTTTAGCCCTACTCGAGC
TAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAA
ATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAA
TATTACTAACCATAATTATAATTTATACCCCATTGCTCTCGAATTTAGGC
TTCTACGCAAACATGGCTATGCAGTTCCTCAAGAAATTTTTAATATATTC
AAAGACATGAGTGGAAAATTTAAAGCAATCATAAATGATGATGATATTAT
GGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAA
GCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAAAATTAC
ATGATGATAACAGAGGAAAACAAATTAGATGATGACGATGATCATAATAA
TATTATTGTAGTAATTAGACATGCGTTAGAGCTTCCACTTCATTGGAGGA
CTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAA
GATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGT
ACAATCAATGCATCAAGACGATCTAAAACATTTGTCTAGGTGGTGGAGTC
ATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGG
TGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTT
TAGGAGAATATCTGCGAGAATATATGTTCTGATTACAATAATCGATGATA
TATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTT
GTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAA
GATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCACTAGATG
TATTAAAAGAAAAACACTTTGTCAACATTGAATGCCTCAAGAAAACGTGG
GGTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGG
ATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAG
GAGCACCAATTATTCTTGTGCATGCTTATTTCTCTTTTGCAAATCCCATA
ACTAAAGAGGTTTTGGAAATCTTCCAACAAGGTTATCCCACAATAATTCG
TCAATCTGCCATGATCGTACGTTTGGCAAATGATCTAGCAACATCATCTG
AGGAATTCGAAAGAGGTGACTCGCCTAAATCAATTCAATGTTACATGCAA
GAACATAACGTATCTAAAGAGGAAGCTCGTGAATACATTAAGTTTTCAAT
AAGAGAAACATGGAAGGAGATGAATAGTACTTTTAATATTGAAGATGGAA
ATTCATCATTGGTTGATGATGCCAAAAACTTTGCAAGAATGGGATTATTT
ATGTATCAACATGGAGATGGACATAGTTCTCAAGATAATTTAGCAAAAGA
GCGTATTTCAAAATTCATTATCAATCCTATAGATATACACGATTCTCTTT
CTTTTTGA

Sequence Length

1908

Sequence Checksum

acbd4b7ca14dc4956a67daf21da02256

Summary

Resource Type	mRNA
Accession	MK614217.1
Organism	Cannabis sativa L.
Name	MK614217.1
Identifier	MK614217.1
Time Accessioned	Thursday, November 21, 2024 - 10:08
Time Last Modified	Thursday, November 21, 2024 - 10:08