1. Phenome
  2. Expression heatmap

Expression heatmap

Feature Expression Visualization

Feature unique names need to be separated by commas.
Example feature unique names: PK02031.1,PK28033.1,PK07933.1,FN03409.1,FN18469.1,FN24991.1,FN06921.1,FN17593.1,FN03569.3,FN23292.1,FN02374.1,ARE72266.1,CAI11094.1,DAC76710.1,DAC76713.1,TPS2_CANSA,XP_030477625.1,XP_030477635.1,XP_030477674.1,GIFP01059939.1,GIFP01059938.1,GIFP01059937.1,GIFP01059934.1,GIFP01059930.1,GIFP01059925.1,GIFP01059923.1,GIFP01059922.1,GIFP01059920.1,GIFP01059918.1,XM_030650709.1,XM_030638442.1,,XM_030654993.1

 

 

Expression data sources and licences

Data

Source

Licence
Expression values
Reference Samples Tissue/Condition Treatment Measurements
Guerriero 2017 10.1038/s41598-017-05200-8 GEO GSE94156  C. sativa cv. Santhica 27 Three stem regions: top, middle, bottom   FN, finola1
Massimino 2017 10.12688/f1000research.10631.1  GEO GSE93201 Gene expression datasets from  SRP006678 and SRP008673 (Purple Kush, Finola, USO-31)

SRP006678 mature leaf, immature leaf, flower buds, primary stem, young leaf, mature flower, stem-petioles, entire root

SRP008673 young leaf, roots, shoots, stems, pre-flowers, early-stage flowers, mid-stage flowers

   PK, canSat3
Gao 2018 10.1155/2018/3057272  GEO GSE56964 Hemp cultivar Yunma 1
  • leaves, roots, stem bast, and stem shoots were collected separately. 
  • Separate ABA treatment and collected after 3, 6 hrs
  • Equal samples pooled

drought stressed plants (DS), control (CK),

abscisic acid

 PK, reads aligned to Purple Kush AGQN00000000 and transcript assembly with Cufflinks 
Livingston 2020 10.1111/tpj.14516 Finola Trichome: bulbous, sessile, stalked   FN, finola1
21 Trichomes RNA-Seq 

21 Trichome samples in 3 replicates (63 total), listed in Genotype Viewer

 Trichome  

cs10 XM XR mRNA, FN, PK , cs10r21t  (described in Gene Search)
NCBI data usage policy

 

Differential expression

 

Reference

 Samples Tissue Treatment Measurements
Braich 2019 10.1038/s41598-019-53023-6  BioProject PRJNA560453 Cannbio-2
  • stem, root-tip, root-mid, leaf from freshly planted cutting, vegetative plant to reproductive plant.
  • floral bud tissues and trichomes were isolated from reproductive plants at  35, 42, 49 and 56 days after induction of flowering in the female plants
  • male vegetative leaf and reproductive tissues (pollen sacs) from the male strain 
   Cannbio2 TSA GIFP00000000
Conneely 2021 10.1371/journal.pone.0242633 C. sativa cultivar hemp No.8 Flower, glandular trichome head and stalk   cs10 peptide, hemp in uniport
 
PK transcripts van Bakel 2011 10.1186/gb-2011-12-10-r102   BioProject PRJNA74271, GenBank Nucleotide JP449145.1 to JP482359.1 NCBI data usage policy

FN transcripts

utoronto.ca  , van Bakel 2011 10.1186/gb-2011-12-10-r102 

No license statement
Cannbio2 transcripts GenBank GIFP00000000.1 NCBI data usage policy