MN967480.1 | ICGRC

Annotations

Contact

Cross Reference

Location on Map

Properties

Relationship

Publication

Sequences

Summary

Annotations

This record has the following annotations.
Term	Name	Definition
GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai]
GO:0016829	lyase activity
GO:0010333	terpene synthase activity	Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. [EC:4.2.3.-, GOC:tair_curators]
INTERPRO:IPR008930	Terpenoid_cyclase/PrenylTrfase
INTERPRO:IPR001906	Terpene_synth_N
INTERPRO:IPR008949	Isoprenoid_synthase_dom_sf
INTERPRO:IPR036965	Terpene_synth_N_sf
INTERPRO:IPR005630	Terpene_synthase_metal-bd

Click a tab below to view blast alignments.

blastn of TPS CDS against pkv5 genome

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 genome
Display provided by the neXtProt Feature Viewer

Show Results Table

[Close]

BLAST of MN967480.1 vs. Genbank
Match Name: CM010790.2
Description: Cannabis sativa cultivar Purple Kush chromosome 1, whole genome shotgun sequence

HSP 1 Score: 368.604 bits (199), Expect = 1.848e-99
Identity = 260/288 (90.28%), Postives = 260/288 (90.28%), Query Frame = 1

Query:      320 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAA------TATTACTAACCATAATT---ATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAG 598
                |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||| || ||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||      ||||||||||| |||||   ||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct:  3066040 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGGTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAG 3066327

HSP 2 Score: 259.651 bits (140), Expect = 1.160e-66
Identity = 324/412 (78.64%), Postives = 324/412 (78.64%), Query Frame = 1

Query:      597 AGAAATTTTTAAT-ATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAAC-CAAGTGTCTCGAAAATTACATGATGAT-A-A-CGGAGGAAAACAAATTAGATGA-TGATGATGATCGTAATAAT-ATTATTGTA-GTAATTAG--A--CATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACAT 996
                ||| ||||||||| ||||| || |||| ||  |||||| | ||| | | ||| | |   ||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| || || || |||| |||  |||||||||| ||| | |||  | || ||||| || || | | |  | ||||  || ||| |||| |||| |||||  | || || |||||  ||   || |||  |  || || || ||||| |||||||||||||||||| ||||||| || || |||||||| ||||| |  || ||||||| |||||| |||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||  ||||| |||||||||||||||
Sbjct:  2519050 AGAGATTTTTAATCATTTT-AAGGACGAGATAGGAAAAATCAAAACGAACATGATTAGTGATGATATTATGGAAGTATTGGCCTTATATGAAGCTTCATTCTATGAGAAAAAAGGCGAAAGTATTTTAGAAGAAGTTAGAATTTTCACAACTCAA-TATCTAAAGAACTACATTATAATGATATCACAAGAAAGAAAGTTA-ATGATTGATAATGATAATGATTATGATTATGATATCGAAATAGTGAATCACGCTTTGGAGCTCCCACTTCATTGGAGGACTACAAGAACAGAAGCTAAGTGGTTCATCGACGCGTATGAGAAAAAACAAGACATGAATCCTATTTTGCTTGAGTTTGCTAAACTCGATTTCAACATGATACAATCAACACATCATGACGATCTAAAACAT 2519458

HSP 3 Score: 183.939 bits (99), Expect = 7.184e-44
Identity = 123/135 (91.11%), Postives = 123/135 (91.11%), Query Frame = 1

Query:     1362 GTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT 1496
                |||||| |||||||||| |  |||  | |||||||||||||||||||||| |||||||||||||||| |  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2530193 GTGGGTCGATATGTGTAAAAGTTTCTTGCAAGAGGCAAAATGGTACTATAGTGGATACACACCAACAATGGAAGAATATATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT 2530327

HSP 4 Score: 126.692 bits (68), Expect = 1.228e-26
Identity = 120/145 (82.76%), Postives = 120/145 (82.76%), Query Frame = 1

Query:     1222 AGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGAAAAACACTT-TG--TCAACATTGAATGCCTCAAGAAAACGT 1363
                ||||||||| |  || |  |||| || |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| ||| || ||||||| |||  ||||| | |   |||||||| ||| ||| ||||||||||
Sbjct:  2520436 AGATGGGATATGGAAATGATAAATGAGTTACCAGAATATATGAAGATGCCTTATATTGTTTTACACAATACCATTAATGAAATGGTATTTGAGGTATTAAGAGACCAACACATCTCCATCAACATTCAATACCTTAAGAAAACGT 2520580

[Close]

BLAST of MN967480.1 vs. Genbank
Match Name: AGQN03003403.1
Description: Cannabis sativa cultivar Purple Kush 003407F, whole genome shotgun sequence

HSP 1 Score: 248.571 bits (134), Expect = 2.512e-63
Identity = 322/412 (78.16%), Postives = 322/412 (78.16%), Query Frame = 1

Query:      597 AGAAATTTTTAAT-ATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAAC-CAAGTGTCTCGAAAATTACATGATGAT-A-A-CGGAGGAAAACAAATTAGATGA-TGATGATGATCGTAATAAT-ATTATTGTA-GTAATTAG--A--CATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACAT 996
                ||| ||||||||| ||||| || |||| ||  |||||| | ||| | | ||| | |   ||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| || || || |||| |||  |||||||||| ||| | |||  | || ||||| || || | | |  | ||||  || ||| |||| |||| |||||  | || || |||||  ||   || |||  |  || || || ||||| ||||||||| |||||||| ||||||| || || |||||||| ||||| |  || ||||||| |||||| |||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||  ||||| || ||||||||||||
Sbjct:    17986 AGAGATTTTTAATCATTTT-AAGGACGAGATAGGAAAAATCAAAACGAACATGATTAGTGATGATATTATGGAAGTATTGGCCTTATATGAAGCTTCATTCTATGAGAAAAAAGGCGAAAGTATTTTAGAAGAAGTTAGAATTTTCACAACTCAA-TATCTAAAGAACTACATTATAATGATATCACAAGAAAGAAAGTTA-ATGATTGATAATGATAATGATTATGATTATGATATCGAAATAGTGAATCACGCTTTGGAGCTCCCACTTCATCGGAGGACTACAAGAACAGAAGCTAAGTGGTTCATCGACGCGTATGAGAAAAAACAAGACATGAATCCTATTTTGCTTGAGTTTGCTAAACTCGATTTCAACATGATACAATCAACACATCATGATGATCTAAAACAT 18394

HSP 2 Score: 189.479 bits (102), Expect = 1.544e-45
Identity = 124/135 (91.85%), Postives = 124/135 (91.85%), Query Frame = 1

Query:     1362 GTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT 1496
                |||||| |||||||||| |  |||  | |||||||||||||||||||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    36053 GTGGGTCGATATGTGTAAAAGTTTCTTGCAAGAGGCAAAATGGTACTATAGTGGATACACACCAACATTGGAAGAATATATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT 36187

HSP 3 Score: 124.846 bits (67), Expect = 4.416e-26
Identity = 119/144 (82.64%), Postives = 119/144 (82.64%), Query Frame = 1

Query:     1222 AGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGAAAAACACTT-TG--TCAACATTGAATGCCTCAAGAAAACG 1362
                ||||||||| |  || |  |||| || |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| ||| || ||||||| |||  ||||| | |   |||||||| ||| ||| |||||||||
Sbjct:    19312 AGATGGGATATGGAAATGATAAATGAGTTACCAGAATATATGAAGATGCCTTATATTGTTTTACACAATACCATTAATGAAATGGTATTTGAGGTATTAAGAGACCAACACATCTCCATCAACATTCAATACCTTAAGAAAACG 19455

[Close]

BLAST of MN967480.1 vs. Genbank
Match Name: AGQN03000042.1
Description: Cannabis sativa cultivar Purple Kush 000041F, whole genome shotgun sequence

HSP 1 Score: 73.1396 bits (39), Expect = 1.622e-10
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1

Query:      170 AATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATA 211
                ||||||||||||||||||||||||||||| ||||||||||||
Sbjct:   178233 AATCAAGTACTTGCTACCCCATCCAATGTGCTGTGGTCAATA 178192


Match Name	Summary
CM010790.2	E-Value: 1.848e-99, PID: 90.28 Description: Cannabis sativa cultivar Purple Kush chromosome 1, whole genome shotgun sequence [more]
AGQN03003403.1	E-Value: 2.512e-63, PID: 78.16 Description: Cannabis sativa cultivar Purple Kush 003407F, whole genome shotgun sequence [more]
AGQN03000042.1	E-Value: 1.622e-10, PID: 97.62 Description: Cannabis sativa cultivar Purple Kush 000041F, whole genome shotgun sequence [more]

blastn of TPS CDS against pkv5 mRNA

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 mRNA
Display provided by the neXtProt Feature Viewer

Show Results Table

[Close]

BLAST of MN967480.1 vs. Genbank
Match Name: PKGMv1-70835_t
Description: No definition line

HSP 1 Score: 139.619 bits (75), Expect = 2.081e-31
Identity = 196/253 (77.47%), Postives = 196/253 (77.47%), Query Frame = 1

Query:      655 GATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAAC-CAAGTGTCTCGAAAATTACATGATGAT-A-A-CGGAGGAAAACAAATTAGATGA-TGATGATGATCGTAATAAT-ATTATTGTA-GTAATTAG--A--CATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGA 896
                ||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| || || || |||| |||  |||||||||| ||| | |||  | || ||||| || || | | |  | ||||  || ||| |||| |||| |||||  | || || |||||  ||   || |||  |  || || || ||||| |||||||||||||||||| ||||||| || || |||||||| |||||
Sbjct:       10 GATGATATTATGGAAGTATTGGCCTTATATGAAGCTTCATTCTATGAGAAAAAAGGCGAAAGTATTTTAGAAGAAGTTAGAATTTTCACAACTCAA-TATCTAAAGAACTACATTATAATGATATCACAAGAAAGAAAGTTA-ATGATTGATAATGATAATGATTATGATTATGATATCGAAATAGTGAATCACGCTTTGGAGCTCCCACTTCATTGGAGGACTACAAGAACAGAAGCTAAGTGGTTCATCGA 260


Match Name	Summary
PKGMv1-70835_t	E-Value: 2.081e-31, PID: 77.47 Description: No definition line [more]

blastn of TPS CDS against cs10 genome

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 genome
Display provided by the neXtProt Feature Viewer

Show Results Table

[Close]

BLAST of MN967480.1 vs. Genbank
Match Name: NC_044374.1
Description: Cannabis sativa chromosome 5, cs10, whole genome shotgun sequence

HSP 1 Score: 374.144 bits (202), Expect = 3.902e-101
Identity = 261/288 (90.62%), Postives = 261/288 (90.62%), Query Frame = 1

Query:      320 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAATATTA------CTAACCATAATTATAAT---TTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAG 598
                |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| || ||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||      |||||| ||||||||||   |||||  ||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct:  2523118 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGCTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAG 2522831

HSP 2 Score: 368.604 bits (199), Expect = 1.815e-99
Identity = 260/288 (90.28%), Postives = 260/288 (90.28%), Query Frame = 1

Query:      320 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAATATTA------CTAACCATAATTATAAT---TTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAG 598
                |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||| || ||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||      |||||| ||||||||||   |||||  ||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct:  2484488 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGGTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAG 2484201

HSP 3 Score: 254.111 bits (137), Expect = 5.304e-65
Identity = 323/412 (78.40%), Postives = 323/412 (78.40%), Query Frame = 1

Query:      597 AGAAATTTTTAAT-ATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAAC-CAAGTGTCTCGAAAATTACATGATGAT-A-A-CGGAGGAAAACAAATTAGATGA-TGATGATGATCGTAATAAT-ATTATTGTA-GTAATTAG--A--CATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACAT 996
                ||| ||||||||| ||||| || |||| ||  |||||| | ||| | | ||| | |   ||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| || || || |||| |||  |||||||||| ||| | |||  | || ||||| || || | | |  | ||||  || ||| |||| |||| |||||  | || || |||||  ||   || |||  |  || || || ||||| ||||||||| |||||||| ||||||| || || |||||||| ||||| |  || ||||||| |||||| |||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||  ||||| |||||||||||||||
Sbjct:  2020238 AGAGATTTTTAATCATTTT-AAGGACGAGATAGGAAAAATCAAAACGAACATGATTAGTGATGATATTATGGAAGTATTGGCCTTATATGAAGCTTCATTCTATGAGAAAAAAGGCGAAAGTATTTTAGAAGAAGTTAGAATTTTCACAACTCAA-TATCTAAAGAACTACATTATAATGATATCACAAGAAAGAAAGTTA-ATGATTGATAATGATAATGATTATGATTATGATATCGAAATAGTGAATCACGCTTTGGAGCTCCCACTTCATCGGAGGACTACAAGAACAGAAGCTAAGTGGTTCATCGACGCGTATGAGAAAAAACAAGACATGAATCCTATTTTGCTTGAGTTTGCTAAACTCGATTTCAACATGATACAATCAACACATCATGACGATCTAAAACAT 2020646

HSP 4 Score: 189.479 bits (102), Expect = 1.517e-45
Identity = 124/135 (91.85%), Postives = 124/135 (91.85%), Query Frame = 1

Query:     1362 GTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT 1496
                |||||| |||||||||| |  |||  | |||||||||||||||||||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2036267 GTGGGTCGATATGTGTAAAAGTTTCTTGCAAGAGGCAAAATGGTACTATAGTGGATACACACCAACATTGGAAGAATATATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT 2036401

HSP 5 Score: 124.846 bits (67), Expect = 4.339e-26
Identity = 119/144 (82.64%), Postives = 119/144 (82.64%), Query Frame = 1

Query:     1222 AGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGAAAAACACTT-TG--TCAACATTGAATGCCTCAAGAAAACG 1362
                ||||||||| |  || |  |||| || |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| ||| || ||||||| |||  ||||| | |   |||||||| ||| ||| |||||||||
Sbjct:  2021626 AGATGGGATATGGAAATGATAAATGAGTTACCAGAATATATGAAGATGCCTTATATTGTTTTACACAATACCATTAATGAAATGGTATTTGAGGTATTAAGAGACCAACACATCTCCATCAACATTCAATACCTTAAGAAAACG 2021769

[Close]

BLAST of MN967480.1 vs. Genbank
Match Name: NC_044373.1
Description: Cannabis sativa chromosome 4, cs10, whole genome shotgun sequence

HSP 1 Score: 71.293 bits (38), Expect = 5.733e-10
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1

Query:      171 ATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATA 211
                |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 70056719 ATCAAGTACTTGCTACCCCATCCAATGTGCTGTGGTCAATA 70056679


Match Name	Summary
NC_044374.1	E-Value: 3.902e-101, PID: 90.63 Description: Cannabis sativa chromosome 5, cs10, whole genome shotgun sequence [more]
NC_044373.1	E-Value: 5.733e-10, PID: 97.56 Description: Cannabis sativa chromosome 4, cs10, whole genome shotgun sequence [more]

blastn of TPS CDS against cs10 mRNA

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 mRNA
Display provided by the neXtProt Feature Viewer

Show Results Table

[Close]

BLAST of MN967480.1 vs. Genbank
Match Name: XM_030645191.1
Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716405), mRNA

HSP 1 Score: 1166.36 bits (631), Expect = 0.000e+0
Identity = 1390/1752 (79.34%), Postives = 1390/1752 (79.34%), Query Frame = 1

Query:      171 ATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATAATAGTAGCCCTAGCTCTAC---TACTAAATTTTCTATTGTTCGAAGATCGGCAAATTATGAACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAA------TATTACTAACCATAATT---ATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAGAAATTTTTAATATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATG--A-GAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAAAATTACATG-A-----TG-ATAACG-G-A-G-GAAAACAA-ATTAG-ATGATGATGATGATCGTAATAATATTA-TT-G-TAGTAATTAGACATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATG---TATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACATTTGTCTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTTTAGGAGAATATCTGCAAGAATATATGTTCTTATTACAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGAAAAACACTTTGTCAACATTGAATGCCTCAAGAAAACGTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTTCTCTTTTGCAAATCCCATAACTAAAGAGGTTTTGGAAATCTTCCAA---CAAGGT--T-ATCCCACAATAATTCGTCAATC-TGCCATGATCGTACGTTTGGCAAATGATCTAGCAACATCATCTGAGGAATTCGAA-AGAGGTGACTCGCCTAAATCAATTCAATGTTACATGCAAGACCATAATG-TATCTAAAGAGGAAGCTCATGAATACATTAAGTTTTCAATAAGAGAAACATGGAAGGAGATGAAT-AGTACTTTTAATATTGA-AGATGGAAATTCATCA--TTG-GTTGATGATGCCAAAAACTTTGCAAGAATGGGATTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGATAATTTAGCAAAAGAGCGTATTTC 1874
                ||||||||||||||||||||| |||||||||||||||    |||  | |||||| |||||   |||| ||  |  || || ||||||||| || || |||| |||||||||||||||||| ||||  |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| || ||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||      ||||||||||| |||||   ||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||| ||   ||| || ||||||||| ||  | | | |   ||||||||||||||| |||||   ||||||||||||||||||||||  | |||| |||   |||  || ||||||||||| ||  ||||  |||| || |||||  |||| |||||| |     || | || | | | | ||||| || ||||  || | |||||| ||  || ||||| || || | || ||||||  || || || |||||||| ||||||||||| |   ||||| |||| || | |||||| || || |   |||| ||||||| |||||| |||||||| |||||| | |||||||| ||| ||||||| || || || |||||||  || ||||| ||| || ||||||| || |||||||||||  ||  |||||| || |  ||| |||||||||  |||||||| |||||||    ||| |||||| |||||||| ||| ||| |||  ||| |||||||| ||||| ||||||  ||||||| ||| ||| ||||| |||||||| |||||||| |||||||| || ||||| || || |||||||||||||||||| ||| |||||| ||||||||||| ||| || | || || ||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| ||||  || |||||||||  | || || |||||||||||||||||| ||| |||||| ||||||| ||| | |||| || || | ||||||| ||||||||||| |||| |||||||  |||||||||  ||||||||| |||    |||||| ||||| |||||||| |||| |||||| ||||||||||||| | |||  ||||||| ||||| ||| | |  ||| ||| ||| |||   |||  |  | ||||||  ||||||   ||| | |||  ||||   | |  | ||| ||||| ||| |||||| || || ||||| ||| ||||| |||   |||||||| ||||||||||||||| | ||  |||||| || |  |||| ||||||| |||| |||| ||||| |  ||||| |||||||||||||| |||||| || |   | || || || || ||   || ||  |  ||  ||||| | |  ||||||  | || ||||  | | |||| || ||| |  |||||||||||||| |||||||  ||| |||| ||||||| ||||||||
Sbjct:      208 ATCAAGTACTTGCTACCCCATACAATGTACTGTGGTC---GATA--A-CCCTAGTTCTACGATTACT-AA--TAATAGTGATCGAAGATCAGCCAACTATGGACCTCCGATTTGGTCTTTTGATTTTATTCAATCTCTTCCAATCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGCTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAGAAATTTTTAATGCTTTCAAGGATAAGAGAGGGAAATTTAAAACATGCTTGAGT---GATGATATTATGGGAGTATTGTGTTTATATGAAGCTTCATTCTATGCTATGAAACATGA--AAAT-ATTTTGGAGGAAGCAAGAATTTTTTCAACTAAATGTCTTAAAAAATACATGGAGAAAATGGAGAATGAGGAAGAGAAAAAAATATTATTATTA-GATGATAATAATATTAATAGTAATTTGCTATTAATTAATCACGCTTTCGAGCTTCCGCTTCATTGGAGAATAACAAGATCGGAAGCTAGGTGGTTCATTGACGAAATATATGAGAAAAAACAAGACATGAATTCGACTTTGTTCGAGTTTGCGAAATTAGATTTTAATATAGTGCAATCAACACACCAAGAAGATTTACAACATTTATCGAGGTGGTGGAGGGATTGTAAACTTGGTGGGAAATTGAATTTTGCTAGAGATAGATTGATGGAAGCTTTCTTATGGGATGTTGGACTAAAATTCGAGGGAGAATTCAGCTATTTTAGAAGAATAAATGCAAGATTATTTGTGCTTATAACAATAATTGATGATATTTATGATGTATATGGAACTTTGGAGGAATTAGAGCTTTTCACTAGTGCTGTTGAAAGATGGGATGTGAAATTAATCAATGAGTTACCAGATTACATGAAGATGCCTTTCTTTGTTTTACACAATACCATAAATGAGATGGGGTTCGATGTATTAGTACAACAAAACTTTGTCAACATTGAATACCTTAAGAAATCGTGGGTAGATTTATGTAAATGTTATTTACAAGAAGCAAAATGGTATTATAGTGGATACCAACCAACATTGGAAGAATACACTGAGTTGGGTTGGCTTTCAATAGGAGCATCAGTAATTCTTATGCATGCTTATTTTTGTTTCACAAATCCTATAACAAAACAAGACTTGAAAAGCTTGCAATTACAACATCATTATCCCAACATAATTAAACAAGCATGCT-TGATTACAAGGCTTGCAGATGATTTAGGAACATCTTCGGATGAATT-GAATAGAGGCGACGTTCCTAAATCGATTCAATGTTACATGTACGATAATAATGCTACCG-AAGACGAAGCTCGTGAACACATCAAGTTCTTGATAAGTGAAACATGGAAGGATATGAATAAGAAAGATGAAGAT-GAGAGTTGTTTAT-CAGAAAATTTTGTTGAAGTTTGCAAAAATATGGCTAGAACAGCACTATTCATATATGAGAATGGAGATGGACATGGTTCTCAGAATAGTTTATCAAAAGAACGTATTTC 1938

[Close]

BLAST of MN967480.1 vs. Genbank
Match Name: XM_030644766.1
Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716063), transcript variant X1, mRNA

HSP 1 Score: 1155.28 bits (625), Expect = 0.000e+0
Identity = 1388/1752 (79.22%), Postives = 1388/1752 (79.22%), Query Frame = 1

Query:      171 ATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATAATAGTAGCCCTAGCTCTAC---TACTAAATTTTCTATTGTTCGAAGATCGGCAAATTATGAACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAA------TATTACTAACCATAATT---ATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAGAAATTTTTAATATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATG--A-GAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAAAATTACATG-A-----TG-ATAACG-G-A-G-GAAAACAA-ATTAG-ATGATGATGATGATCGTAATAATATTA-TT-G-TAGTAATTAGACATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATG---TATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACATTTGTCTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTTTAGGAGAATATCTGCAAGAATATATGTTCTTATTACAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGAAAAACACTTTGTCAACATTGAATGCCTCAAGAAAACGTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTTCTCTTTTGCAAATCCCATAACTAAAGAGGTTTTGGAAA-T---C--TTCCAACAAGGTTATCCCACAATAATTCGTCAATC-TGCCATGATCGTACGTTTGGCAAATGATCTAGCAACATCATCTGAGGAATTCGAA-AGAGGTGACTCGCCTAAATCAATTCAATGTTACATGCAAGACCATAATG-TATCTAAAGAGGAAGCTCATGAATACATTAAGTTTTCAATAAGAGAAACATGGAAGGAGATGAAT-AGTACTTTTAATATTGA-AGATGGAAATTCATCA--TTG-GTTGATGATGCCAAAAACTTTGCAAGAATGGGATTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGATAATTTAGCAAAAGAGCGTATTTC 1874
                ||||||||||||||||||||| |||||||||||||||    |||  | |||||| |||||   |||| ||  |  || || ||||||||| || || |||| |||||| ||||||||||| ||||  |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||| || ||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||      ||||||||||| |||||   ||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||| ||   ||| || ||||||||| ||  | | | |   ||||||||||||||| |||||   ||||||||||||||||||||||  | |||| |||   |||  || ||||||||||| ||  ||||  |||| || |||||  |||| |||||| |     || | || | | | | ||||| || ||||  || | |||||| ||  || ||||| || || | || ||||||  || || || |||||||| ||||||||||| |   ||||| |||| || | |||||| || || |   |||| ||||||| |||||| |||||||| |||||| | |||||||| ||| ||||||| || || || |||||||  || ||||| ||| || ||||||| || |||||||||||  ||  |||||| || |  ||| |||||||||  |||||||| |||||||    ||| |||||| |||||||| ||| ||| |||  ||| |||||||| ||||| ||||||  ||||||| ||| ||| ||||| |||||||| |||||||| |||||||| || ||||| || || |||||||||||||||||| ||| |||||| ||||||||||| ||| || | || || ||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| ||||  || |||||||||  | || || |||||||||||||||||| ||| |||||| ||||||| ||| | |||| || || | ||||||| ||||||||||| |||| |||||||  |||||||||  ||||||||| |||    |||||| ||||| |||||||| |||| |||||| ||||||||||||| | |||  ||||||| ||||| ||| | |  ||| ||| |   |  || |||||   ||||||||  ||||||   ||| | |||  ||||   | |  | ||| ||||| ||| |||||| || || ||||| ||| ||||| |||   |||||||| ||||||||||||||| | ||  |||||| || |  |||| ||||||| |||| |||| ||||| |  ||||| |||||||||||||| |||||| || |   | || || || || ||   || ||  |  ||  ||||| | |  ||||||  | || ||||  | | |||| || ||| |  |||||||||||||| |||||||  ||| |||| ||||||| ||||||||
Sbjct:      198 ATCAAGTACTTGCTACCCCATACAATGTACTGTGGTC---GATA--A-CCCTAGTTCTACGATTACT-AA--TAATAGTGATCGAAGATCAGCCAACTATGGACCTCCCATTTGGTCTTTTGATTTTATTCAATCTCTTCCAATCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGGTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAGAAATTTTTAATGCTTTCAAGGATAAGAGAGGGAAATTTAAAACATGCTTGAGT---GATGATATTATGGGAGTATTGTGTTTATATGAAGCTTCATTCTATGCTATGAAACATGA--AAAT-ATTTTGGAGGAAGCAAGAATTTTTTCAACTAAATGTCTTAAAAAATACATGGAGAAAATGGAGAATGAGGAAGAGAAAAAAATATTATTATTA-GATGATAATAATATTAATAGTAATTTGCTATTAATTAATCACGCTTTCGAGCTTCCGCTTCATTGGAGAATAACAAGATCGGAAGCTAGGTGGTTCATTGACGAAATATATGAGAAAAAACAAGACATGAATTCGACTTTGTTCGAGTTTGCGAAATTAGATTTTAATATAGTGCAATCAACACACCAAGAAGATTTACAACATTTATCGAGGTGGTGGAGGGATTGTAAACTTGGTGGGAAATTGAATTTTGCTAGAGATAGATTGATGGAAGCTTTCTTATGGGATGTTGGACTAAAATTCGAGGGAGAATTCAGCTATTTTAGAAGAATAAATGCAAGATTATTTGTGCTTATAACAATAATTGATGATATTTATGATGTATATGGAACTTTGGAGGAATTAGAGCTTTTCACTAGTGCTGTTGAAAGATGGGATGTGAAATTAATCAATGAGTTACCAGATTACATGAAGATGCCTTTCTTTGTTTTACACAATACCATAAATGAGATGGGGTTCGATGTATTAGTACAACAAAACTTTGTCAACATTGAATACCTTAAGAAATCGTGGGTAGATTTATGTAAATGTTATTTACAAGAAGCAAAATGGTATTATAGTGGATACCAACCAACATTGGAAGAATACACTGAGTTGGGTTGGCTTTCAATAGGAGCATCAGTAATTCTTATGCATGCTTATTTTTGTTTCACAAATCCTATAACAAAACAAGACTTGAAAAGTTTGCAATTGCAACATCATTATCCCAACATAATTAAACAAGCATGCT-TGATTACAAGGCTTGCAGATGATTTAGGAACATCTTCGGATGAATT-GAATAGAGGCGACGTTCCTAAATCGATTCAATGTTACATGTACGATAATAATGCTACCG-AAGACGAAGCTCGTGAACACATCAAGTTCTTGATAAGTGAAACATGGAAGGATATGAATAAGAAAGATGAAGAT-GAGAGTTGTTTAT-CAGAAAATTTTGTTGAAGTTTGCAAAAATATGGCTAGAACAGCACTATTCATATATGAGAATGGAGATGGACATGGTTCTCAGAATAGTTTATCAAAAGAACGTATTTC 1928

[Close]

BLAST of MN967480.1 vs. Genbank
Match Name: XM_030645439.1
Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716605), mRNA

HSP 1 Score: 1090.64 bits (590), Expect = 0.000e+0
Identity = 1304/1644 (79.32%), Postives = 1304/1644 (79.32%), Query Frame = 1

Query:      243 TATTGTTCGAAGATCGGCAAATTATGA-ACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGC-AATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGA-ATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAATATTACTAACCATAATTATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAGAAATTTTTAATATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAA-TCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAAAA-T-TAC-ATGATGATAACGGAGGAAAACAAATTAGATGA-TGATGATGATCGTAATAATATTATTGTAGTAATTAGACATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACAT-TTGTCTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTTTAGGAGAATATCTGCAAGAATATATGTTCTTATTACAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGA--AAAACACTTT-GTCAACATTGAATGCCTCAAGAAAACGTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTTCTCTTTT-GCAAATC-----C---CA-T-A-----ACTAAAGAGGTTTTGGAAATCTTCCAACAAGGTTATC--CCA-CAATAATTCGTCAATCTGCCATGATCGTACGTTTGGCAAATGATCTAGCAACATCATCTGAGGAATTCGAAAGAGGTGACTCGCCTAAATCAATTCAATGTTACATGCAAGACCATAATGTATCTAAAGAGGAAGCTCATGAATACATTAAGTTTTCAATAAGAGAAACATGGAAGGAGATGAATAGTACTTTTAATATTGAAGATGGAAATTCATCATTGGTTGATGATGCCAAAAACTTTGC-AAGAATGGGATTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGATAAT 1854
                ||||| |||| |||| || || | |||  ||||| ||||||||||| ||||| |||||||||||| |||  ||||||||||||||| | |||||||| | | | ||| || ||  ||| ||| ||||||| |||| |  || || ||||||   ||||||||||| | ||| ||  | || |||||||||||||| |||||||||||||| | |||| |||||||||||||  |||||||||| ||||||||      |  ||| | |   | |||||  | |  || |||||||||||||||  ||||||||||  |||||||||||||||| ||||||||||||||||| |||||||| |||||||||   || || |||| || | |||||  | ||  ||  ||||||||   ||||||| |||||| |||| || ||||| |||||||| || ||||||||||| || ||||| || ||  ||||||||||  |||||||||| || |||||| |||| |  || || |||||| | ||| |||| || ||| |||| |||| |||||  | || ||  ||| | |||| | |  ||||| |||||||| ||||||||| |||||||  ||||||| || || |||||||| || || | ||| | ||||| |||||| |||||| |||  ||||||||||| || ||||| ||||||||||| ||||||||||  ||||| || |||||||||||| |  || ||||||||||| ||||||||||| ||||| ||| |||||||||  |||||| | |||||||  ||||| ||||||||| ||||| ||||||||||| || | |||||||| ||||| | || | |||| | | ||| ||  ||  | ||| | || |||||||||||||||||||| |||||||| || |||||||||||||||||    | |||||||||||||||||| ||| |  |||| || |||||||| || ||||||||||||| ||||||||||||||||||||| ||||| |||| ||| || || |||| |||  || | | ||   |||||||| ||| ||| |||||||||||||| |||||||||| |  |||  | |||||||||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||   ||||||      |   || | |     ||||||||| |||| |||  |||  || | ||||||   ||  | || ||||||||   |||||| ||  |||| ||  ||||||| |||||||||||||| ||||||||  ||||||||||  | || | ||||||||||||||||||||||||  | ||||||||| |||||||||||| |||| |  ||||||||| |||||  ||| |||||||||||||||||| |  | ||   ||| |  ||  || | | ||||||  ||| ||||| | ||||||||| |||| ||||||| || || ||||||||||| ||||| ||||||||||||||||||
Sbjct:      239 TATTGATCGACGATCTGCCAACTTTGAGCCCTCC-ATTTGGTCTTTTGATTATATTCAATCTCTTACAAGTCAATATAAGGGAGAACCTTATACAAGTCGAGTGAAAAAACTT-GAGAGAGATGTGAAAAAGATGTTAGTT-GAGATGGAA---AACTCTTTAGCTCAACTTGAACTCATTGATACATTGCAAAGACTTGGAATATCTTACCGTTTTGAGAATGAAATAAATTCTATTTTGAACAAAAAATA------T-GTTA-A-T---ATTAATA--A-T--CC-TAATTATAATTTATATGCCATTGCTCTTCAATTTAGGCTTCTACGTCAACATGGCTATGCAGTACCTCAAGAGATTTTTAATCAGTTGAAGGACGAGA-TAGAAAACATCAAAAAACACATAAATGGTAATGATATCATGGGAGTATTAGCCTTATACGAAGCTTCTTTTTATGAGAAAAAAGGCGAAAGTATTTTAAAGGAAGCTAGAATTTTCACAACTAAATGTCTCAAAAACTACACTATAATGATATCAGAGCAAAAAAAGTTA-ATGATTGATAATGATTATGATTATGATATCGAAGTAGTGAATCATGCCTTAGAGCTCCCACTTCATCGGAGGACCACAAGAACAGAAGCAAAGTGGTTCATTGACGCATATGCGAAAAAACAAGACATGAATCCTATGTTGCTTGAGTTAGCCAAACTCGATTTCAACATAGTACAATCAACACATCATGAAGATCTAAAACATATATTC-AGGTGGTGGAGACATACTAAACTTGGAGAGAAATTGAATTTTGCAAGAGATCGATTGATGGAATGTTTCTTATGGAATATTGGAATAAGATTTGAGTCAAAATTCAGCTATTTTAGAACAAAAACTGCCAAATTATTTGAGCTAGTAACATTTATAGATGATATATATGATGTTTATGGAACATTGGATGAATTAGAGCTTTTCACCAAAGCTGTTGAGAGATGGGATGTGAAAATGATAAATGAGTTACCAGAATACATGAAGATGCCTTATCTTGTTTTACACAATACCATAAATGATATGGTATTTGAGGTGTTAAGAGACCAAGAAATTTCCATCAACATTCAATACCTTAAGAAAACGTGGGTCGATATGTGTAAAAGTTTCTTGCAAGAGGCAAAATGGTACTATAGTGGATACACACCAACATTGGAAGAATATATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT-TTTTCACGCAAATAATAATCGTACAATTACAAATACTAAAGAGATTTTCGAATGCTTGGAATATGGTTATTATCCTGCCATTATTCGTCACAGTGCCATAATATTACGATTTACAAATGACCTAGCAACATCATCGGAGGAATTGAAAAGAGGTGATGCTCCGACATCAATTCAATGTTACATGCAAGAAAAAAATGTATCTGAAGAGGAAGCTCGTGAACATGTTAAGTTTTTAATAAATGAAGCATGGAAGGAGATGAATAATGATGTTGG-ATT-AT-ATCCAA-T-C-TCATTGACTGAAGATGCTACAAACTTTGCTAAGA-TGGGATTTTTCATATATCAACATGGTGATGGTCATAGTTCTCAAGATAAT 1847

[Close]

BLAST of MN967480.1 vs. Genbank
Match Name: XM_030645438.1
Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716604), mRNA

HSP 1 Score: 1040.78 bits (563), Expect = 0.000e+0
Identity = 1299/1650 (78.73%), Postives = 1299/1650 (78.73%), Query Frame = 1

Query:      243 TATTGTTCGAAGATCGGCAAATTATGA-ACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGC-AATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGA-ATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAATATTACTAACCATAATTATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAGAAATTTTTAAT-ATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAAC-CAAGTGTCTCGAAAATTAC---ATGATGATAACGGAGGAAAACAAATTAGATGA-TGATGATGATCGTAATAAT-ATTATTGTAGT-AATTA--G-A-CATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACAT-TTGTCTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTTTAGGAGAATATCTGCAAGAATATATGTTCTTATTACAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGAAAAACACTT-TG--TCAACATTGAATGCCTCAAGAAAACGTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTTCTCTTTTGCAAAT------C-C-CA-TAAC------TAAAGAGGTTTTGGAAATCTTCCAACAAGG---TTATCCCACAATAATTCGTCAATCTGCCATGATCGTACGTTTGGCAAATGATCTAGCAACATCATCTGAGGAATTCGAAAGAGGTGACTCGCCTAAATCAATTCAATGTTACATGCAAGACCATAATGTATCTAAAGAGGAAGCTCATGAATACATTAAGTTTTCAATAAGAGAAACATGGAAGGAGATGAATAGTACTTTTAATATTGAAGATGGAAATTCATCATTGGTTGATGATGCCAAAAACTTTGC-AAGAATGGGATTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGATAAT 1854
                ||||| |||| |||| || || | |||  ||||| ||||||||||| ||||| |||||||||||| ||| ||||||||||| |||||| |||||| | | | | ||| || ||  ||| ||| ||||||| |||| |  || || ||||||   || ||||||   | ||| ||  | || || ||||||||||| |||||| ||||||||| |||| || |||||||||| |||||||||||   | || | | | ||| | |||| | |||| | |   || |  || || ||||||||||   || |||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||| || |||| ||  |||||| | ||| | | ||| | |   ||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| || || || |||| |||  |||||||||| ||| | |||  | || |||   || |||||| |  | ||||  || ||| |||| |||| |||||  | || || |||||  ||   || ||  | | || || || ||||| ||||||||| |||||||| ||||||| || || |||||||| ||||| |  || ||||||| |||||| |||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||  ||||| ||||||||||||||| |  || ||||||||||| ||||||||||| || || ||  |||||||||  |||||| | |||||||  ||||| ||||||||  ||||| |||||||||||||| | ||||| || ||||| | || | |||| | | ||| ||  || || ||| |||| |||||||||||||||||||| |||||||| || |||||||||||||||||    | | |||||||||||||| |  || |  |||| || |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| ||| || ||||||| |||  ||||| | |   |||||||| ||| ||| |||||||||||||| ||||||||||||  |||| |||||||||||||||||||||||| |||||| ||||||||| |  ||||||| ||| ||||||||||||||||||| |||||||| ||| |  |||||||||||||||| |||  |||||||      | | || | ||      ||||||| |||| |||  |||  |||| ||   ||||||| | |||||||||||   |||||| ||  ||||  |  ||||||| |||||||||||||| |||||| |  ||||||||||  | || | ||||||||||||||| ||||||||  | || |||||| | ||| |||||| |||| | |||||||||| |||||| |||| |||||| |||||||||| |  | ||   ||| |  ||  || | | |||||| |||| ||||| | ||| ||||| |||| ||||||| || |||||||| ||||| ||||| ||||||||||||||||||
Sbjct:      207 TATTGATCGACGATCTGCCAACTTTGAGCCCTCC-ATTTGGTCTTTTGATTATATTCAATCTCTTACAAGCCAATATAAGGAAGAATCTTATACAGGTCGAGTCAAAGAA-TTGGAGATAGATGTGAAAAAGATGTTAATT-GAGATGGAA---AATTCTTTAATTCAACTTGAACTCATTGACACATTGCAAAGACTTGGAGTATCTTATCGTTTTGAGGATGAAATAAATACTATTTTGAA---AGAA-A-A-ATATATTAATATGATCAAT-A-A-CCCT-A--ATTATAATAATTTATATGTCACTGCTCTTGAATTTAGGCTTCTACGTCAACATGGCTATGCAGTACCTCAAGAGATTTTTAATCATTTT-AAGGACGAGATAGGAAAAATCAAAACGAACATGATTAGTGATGATATTATGGAAGTATTGGCCTTATATGAAGCTTCATTCTATGAGAAAAAAGGCGAAAGTATTTTAGAAGAAGTTAGAATTTTCACAACTCAA-TATCTAAAGAACTACATTATAATGATATCACAAGAAAGAAAGTTA-ATGATTGATAATGATAATGATTATGATTATGATATCGAAATAGTGAATCACGCTTTGGAGCTCCCACTTCATCGGAGGACTACAAGAACAGAAGCTAAGTGGTTCATCGACGCGTATGAGAAAAAACAAGACATGAATCCTATTTTGCTTGAGTTTGCTAAACTCGATTTCAACATGATACAATCAACACATCATGACGATCTAAAACATATATTC-AGGTGGTGGAGGCATACTAAACTTGGGGAGAATTTGAATTTTGCAAGAGATCGATTGATGGAATGTTTCTTATGGAAAATTGGAATAAGATTTGAGCCAAAATTCAGTTATTTTAGAATAACAACTGCCAAATTATTTGAGCTAATAACAGTAATTGATGATATATATGATGTTTATGGAACATTGGATGAATTAGAGCTTTTCACCAAAGCTATTGAGAGATGGGATATGGAAATGATAAATGAGTTACCAGAATATATGAAGATGCCTTATATTGTTTTACACAATACCATTAATGAAATGGTATTTGAGGTATTAAGAGACCAACACATCTCCATCAACATTCAATACCTTAAGAAAACGTGGGTAGATATGTGTAGAGGTTTTTTACAAGAGGCAAAATGGTACTATAGTGGATATACACCAACACTAGAAGAATATATTAAAAATGGTTGGATTTCAGTGGGAGCACCGGTTCTAATTGTGCATGCTTATTTTTCTCATGCAAATTATAATCACACAGTTACAAGTAGTAAAGAGATTTTCGAATGCTTTGAACATGGTTATTATCCCGCCATAATTCGTCATAGTGCCATAATATTACGACTTACAAATGACCTAGCAACATCATCGGAGGAACTGAAAAGAGGTGATGCTCCGACATCAATTCAATGTTATATGCAAGAAAAAAAAGTATCTGAGGAGAAAGCTCGTGAACATATTAAGTTTTTAATAAGTGAAATATGGAAAGAGATGAATAATGATGTTGG-ATT-AT-ATCCAA-T-C-TCATTGATTGAAGATGCTACAAATTTTGCTAAGA-TGGGATTTTTCATGTATCAGCATGGTGATGGTCATAGTTCTCAAGATAAT 1827

[Close]

BLAST of MN967480.1 vs. Genbank
Match Name: XM_030644767.1
Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716063), transcript variant X2, mRNA

HSP 1 Score: 944.758 bits (511), Expect = 0.000e+0
Identity = 994/1223 (81.28%), Postives = 994/1223 (81.28%), Query Frame = 1

Query:      171 ATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATAATAGTAGCCCTAGCTCTAC---TACTAAATTTTCTATTGTTCGAAGATCGGCAAATTATGAACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAA------TATTACTAACCATAATT---ATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAGAAATTTTTAATATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATG--A-GAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAAAATTACATG-A-----TG-ATAACG-G-A-G-GAAAACAA-ATTAG-ATGATGATGATGATCGTAATAATATTA-TT-G-TAGTAATTAGACATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATG---TATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACATTTGTCTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTTTAGGAGAATATCTGCAAGAATATATGTTCTTATTACAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGAAAAACACTTTGTCAACATTGAATGCCTCAAGAAA 1359
                ||||||||||||||||||||| |||||||||||||||    |||  | |||||| |||||   |||| ||  |  || || ||||||||| || || |||| |||||| ||||||||||| ||||  |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||| || ||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||      ||||||||||| |||||   ||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||| ||   ||| || ||||||||| ||  | | | |   ||||||||||||||| |||||   ||||||||||||||||||||||  | |||| |||   |||  || ||||||||||| ||  ||||  |||| || |||||  |||| |||||| |     || | || | | | | ||||| || ||||  || | |||||| ||  || ||||| || || | || ||||||  || || || |||||||| ||||||||||| |   ||||| |||| || | |||||| || || |   |||| ||||||| |||||| |||||||| |||||| | |||||||| ||| ||||||| || || || |||||||  || ||||| ||| || ||||||| || |||||||||||  ||  |||||| || |  ||| |||||||||  |||||||| |||||||    ||| |||||| |||||||| ||| ||| |||  ||| |||||||| ||||| ||||||  ||||||| ||| ||| ||||| |||||||| |||||||| |||||||| || ||||| || || |||||||||||||||||| ||| |||||| ||||||||||| ||| || | || || ||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| ||||  || |||||||||  | || || |||||||||||||||||| ||| ||||||
Sbjct:      198 ATCAAGTACTTGCTACCCCATACAATGTACTGTGGTC---GATA--A-CCCTAGTTCTACGATTACT-AA--TAATAGTGATCGAAGATCAGCCAACTATGGACCTCCCATTTGGTCTTTTGATTTTATTCAATCTCTTCCAATCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGGTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAGAAATTTTTAATGCTTTCAAGGATAAGAGAGGGAAATTTAAAACATGCTTGAGT---GATGATATTATGGGAGTATTGTGTTTATATGAAGCTTCATTCTATGCTATGAAACATGA--AAAT-ATTTTGGAGGAAGCAAGAATTTTTTCAACTAAATGTCTTAAAAAATACATGGAGAAAATGGAGAATGAGGAAGAGAAAAAAATATTATTATTA-GATGATAATAATATTAATAGTAATTTGCTATTAATTAATCACGCTTTCGAGCTTCCGCTTCATTGGAGAATAACAAGATCGGAAGCTAGGTGGTTCATTGACGAAATATATGAGAAAAAACAAGACATGAATTCGACTTTGTTCGAGTTTGCGAAATTAGATTTTAATATAGTGCAATCAACACACCAAGAAGATTTACAACATTTATCGAGGTGGTGGAGGGATTGTAAACTTGGTGGGAAATTGAATTTTGCTAGAGATAGATTGATGGAAGCTTTCTTATGGGATGTTGGACTAAAATTCGAGGGAGAATTCAGCTATTTTAGAAGAATAAATGCAAGATTATTTGTGCTTATAACAATAATTGATGATATTTATGATGTATATGGAACTTTGGAGGAATTAGAGCTTTTCACTAGTGCTGTTGAAAGATGGGATGTGAAATTAATCAATGAGTTACCAGATTACATGAAGATGCCTTTCTTTGTTTTACACAATACCATAAATGAGATGGGGTTCGATGTATTAGTACAACAAAACTTTGTCAACATTGAATACCTTAAGAAA 1404

[Close]

BLAST of MN967480.1 vs. Genbank
Match Name: XM_030640479.1
Description: PREDICTED: Cannabis sativa pentatricopeptide repeat-containing protein At2g13600 (LOC115712221), transcript variant X2, mRNA

HSP 1 Score: 71.293 bits (38), Expect = 4.273e-11
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1

Query:      171 ATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATA 211
                |||||||||||||||||||||||||||| ||||||||||||
Sbjct:      112 ATCAAGTACTTGCTACCCCATCCAATGTGCTGTGGTCAATA 72

[Close]

BLAST of MN967480.1 vs. Genbank
Match Name: XM_030640478.1
Description: PREDICTED: Cannabis sativa pentatricopeptide repeat-containing protein At2g13600 (LOC115712221), transcript variant X1, mRNA

HSP 1 Score: 71.293 bits (38), Expect = 4.273e-11
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1

Query:      171 ATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATA 211
                |||||||||||||||||||||||||||| ||||||||||||
Sbjct:      112 ATCAAGTACTTGCTACCCCATCCAATGTGCTGTGGTCAATA 72


Match Name	Summary
XM_030645191.1	E-Value: 0.000e+0, PID: 79.34 Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716405), mRNA [more]
XM_030644766.1	E-Value: 0.000e+0, PID: 79.22 Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716063), transcript variant X1, mRNA [more]
XM_030645439.1	E-Value: 0.000e+0, PID: 79.32 Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716605), mRNA [more]
XM_030645438.1	E-Value: 0.000e+0, PID: 78.73 Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716604), mRNA [more]
XM_030644767.1	E-Value: 0.000e+0, PID: 81.28 Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716063), transcript variant X2, mRNA [more]
XM_030640479.1	E-Value: 4.273e-11, PID: 97.56 Description: PREDICTED: Cannabis sativa pentatricopeptide repeat-containing protein At2g13600 (LOC115712221), transcript variant X2, mRNA [more]
XM_030640478.1	E-Value: 4.273e-11, PID: 97.56 Description: PREDICTED: Cannabis sativa pentatricopeptide repeat-containing protein At2g13600 (LOC115712221), transcript variant X1, mRNA [more]

Interpro result TPS-TSA-THC Csativa

Performed on: 2021-09-02
Display provided by the neXtProt Feature Viewer


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 42..42
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..22
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 23..41
None	No IPR available	COILS	Coil	Coil	coord: 36..40
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..28
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 29..49
None	No IPR available	TMHMM	TMhelix		coord: 6..28
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..26
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 27..44
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 45..75
None	No IPR available	TMHMM	TMhelix		coord: 27..44
None	No IPR available	COILS	Coil	Coil	coord: 108..128
None	No IPR available	PANTHER	PTHR31225	FAMILY NOT NAMED	coord: 83..633
None	No IPR available	PANTHER	PTHR31225:SF9		coord: 83..633
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 28..40
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..27
None	No IPR available	TMHMM	TMhelix		coord: 5..27
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 32..47
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..31
None	No IPR available	TMHMM	TMhelix		coord: 7..29
IPR005630	Terpene synthase, metal-binding domain	PFAM	PF03936	Terpene_synth_C	coord: 312..578 e-value: 5.8E-99 score: 330.8
IPR036965	Terpene synthase, N-terminal domain superfamily	GENE3D	1.50.10.130		coord: 130..306 e-value: 7.6E-192 score: 640.2
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10		coord: 93..617 e-value: 7.6E-192 score: 640.2
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 307..632
IPR001906	Terpene synthase, N-terminal domain	PFAM	PF01397	Terpene_synth	coord: 94..261 e-value: 1.1E-48 score: 165.4
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 91..307

Cannabis sativa cultivar Chocolope terpene synthase 23 mRNA
complete cds

Reanalysis of 21 trichome RNA-Seq samples, FN-clones109 (TMM50 minvalue)

Reanalysis of 21 trichome RNA-Seq samples, PK-clones109 (TMM50 minvalue)

Interpro result TPS-TSA-THC Csativa

blastn of TPS CDS against cs10 mRNA

blastn of TPS CDS against cs10 genome

blastn of TPS CDS against pkv5 mRNA

blastn of TPS CDS against pkv5 genome

NCBI Download

Sequences

Sequence	ATGTATATATATAATTACAAAAAAAAAAAAAAAATGCATTATATGGCTGT TCACCAATTTGGTCCATCAATAATATCATCATCACTACCTTGCATTAGTA CTAATAATAATCACTTAATTTGTAAATATTTCACACCAAAAACATCTATT AGTCCTATTTCAAAATCAAAATCAAGTACTTGCTACCCCATCCAATGTAC TGTGGTCAATAATAGTAGCCCTAGCTCTACTACTAAATTTTCTATTGTTC GAAGATCGGCAAATTATGAACCTCCGATTTGGTCTTTCGATTACATTCAA TCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAA GTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTT TAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTAT CATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATAC TTATATTAACAATAATATTACTAACCATAATTATAATTTATACCCCATTG CTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAGAA ATTTTTAATATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAA TGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATG AGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAG TGTCTCGAAAATTACATGATGATAACGGAGGAAAACAAATTAGATGATGA TGATGATCGTAATAATATTATTGTAGTAATTAGACATGCGTTAGAGCTTC CACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTA TACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACT AGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACATTTGT CTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGA GATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCC AGATTTCAGCTACTTTAGGAGAATATCTGCAAGAATATATGTTCTTATTA CAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAG CTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTT ACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATG AAATGGCATTAGATGTATTAAAAGAAAAACACTTTGTCAACATTGAATGC CTCAAGAAAACGTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAA ATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATG GTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTTCTCT TTTGCAAATCCCATAACTAAAGAGGTTTTGGAAATCTTCCAACAAGGTTA TCCCACAATAATTCGTCAATCTGCCATGATCGTACGTTTGGCAAATGATC TAGCAACATCATCTGAGGAATTCGAAAGAGGTGACTCGCCTAAATCAATT CAATGTTACATGCAAGACCATAATGTATCTAAAGAGGAAGCTCATGAATA CATTAAGTTTTCAATAAGAGAAACATGGAAGGAGATGAATAGTACTTTTA ATATTGAAGATGGAAATTCATCATTGGTTGATGATGCCAAAAACTTTGCA AGAATGGGATTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGA TAATTTAGCAAAAGAGCGTATTTCGAAATTCATTATCAATCCTATAGATA TACACGATTTTCTTTCTTTTTGA
Sequence Length	1923
Sequence Checksum	f587b991ea365bde01a68c34442d576f

Sequence

ATGTATATATATAATTACAAAAAAAAAAAAAAAATGCATTATATGGCTGT
TCACCAATTTGGTCCATCAATAATATCATCATCACTACCTTGCATTAGTA
CTAATAATAATCACTTAATTTGTAAATATTTCACACCAAAAACATCTATT
AGTCCTATTTCAAAATCAAAATCAAGTACTTGCTACCCCATCCAATGTAC
TGTGGTCAATAATAGTAGCCCTAGCTCTACTACTAAATTTTCTATTGTTC
GAAGATCGGCAAATTATGAACCTCCGATTTGGTCTTTCGATTACATTCAA
TCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAA
GTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTT
TAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTAT
CATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATAC
TTATATTAACAATAATATTACTAACCATAATTATAATTTATACCCCATTG
CTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAGAA
ATTTTTAATATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAA
TGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATG
AGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAG
TGTCTCGAAAATTACATGATGATAACGGAGGAAAACAAATTAGATGATGA
TGATGATCGTAATAATATTATTGTAGTAATTAGACATGCGTTAGAGCTTC
CACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTA
TACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACT
AGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACATTTGT
CTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGA
GATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCC
AGATTTCAGCTACTTTAGGAGAATATCTGCAAGAATATATGTTCTTATTA
CAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAG
CTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTT
ACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATG
AAATGGCATTAGATGTATTAAAAGAAAAACACTTTGTCAACATTGAATGC
CTCAAGAAAACGTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAA
ATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATG
GTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTTCTCT
TTTGCAAATCCCATAACTAAAGAGGTTTTGGAAATCTTCCAACAAGGTTA
TCCCACAATAATTCGTCAATCTGCCATGATCGTACGTTTGGCAAATGATC
TAGCAACATCATCTGAGGAATTCGAAAGAGGTGACTCGCCTAAATCAATT
CAATGTTACATGCAAGACCATAATGTATCTAAAGAGGAAGCTCATGAATA
CATTAAGTTTTCAATAAGAGAAACATGGAAGGAGATGAATAGTACTTTTA
ATATTGAAGATGGAAATTCATCATTGGTTGATGATGCCAAAAACTTTGCA
AGAATGGGATTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGA
TAATTTAGCAAAAGAGCGTATTTCGAAATTCATTATCAATCCTATAGATA
TACACGATTTTCTTTCTTTTTGA

Sequence Length

1923

Sequence Checksum

f587b991ea365bde01a68c34442d576f

Summary

Resource Type	mRNA
Accession	MN967480.1
Organism	Cannabis sativa L.
Name	MN967480.1
Identifier	MN967480.1
Time Accessioned	Saturday, December 21, 2024 - 12:53
Time Last Modified	Saturday, December 21, 2024 - 12:53