TPS43 | ICGRC

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Summary

Annotations

This record has the following annotations.
Term	Name	Definition
GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai]
GO:0016829	lyase activity
GO:0010333	terpene synthase activity	Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. [EC:4.2.3.-, GOC:tair_curators]
INTERPRO:IPR008930	Terpenoid_cyclase/PrenylTrfase
INTERPRO:IPR036965	Terpene_synth_N_sf
INTERPRO:IPR005630	Terpene_synthase_metal-bd
INTERPRO:IPR001906	Terpene_synth_N
INTERPRO:IPR008949	Isoprenoid_synthase_dom_sf

Click a tab below to view blast alignments.

blastn of TPS CDS against pkv5 genome

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 genome
Display provided by the neXtProt Feature Viewer

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BLAST of TPS43 vs. Genbank
Match Name: CM010798.2
Description: Cannabis sativa cultivar Purple Kush chromosome 9, whole genome shotgun sequence

HSP 1 Score: 708.387 bits (383), Expect = 0.000e+0
Identity = 383/383 (100.00%), Postives = 383/383 (100.00%), Query Frame = 1

Query:      234 AGATGTGTTTGACAGATTTAGAGGCAGAGATGGGAAATTCTTGGACAGCTTAAGCAGTAACAAGCATGGAATTTTGAGTTTGTATGAAGCTTCACACCTTGGAATGGCTGAAGAAAATGTTTTGGAGGAAGCCAAGAGTTTCACCACCAAAAGGCTAAGATATTTCTCAGCTGGGAAAATGGATAATACTTTGTTTGGTAAGCAAGTGAAACAATCACTGGAAGTTCCACTGTATTGGAGGATGCCAAGATCTGAAGCTAGGAATTTCATTGATCTCTACCAAATGGATGAGACAAAGAGTGTGACTTTGCTTGAGTTGGCTAAGTTGGATTATAATCTGGTCCAATCTGTGCATCAAAATGAGCTTAAGGAGTTGGGAAGGT 616
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40594184 AGATGTGTTTGACAGATTTAGAGGCAGAGATGGGAAATTCTTGGACAGCTTAAGCAGTAACAAGCATGGAATTTTGAGTTTGTATGAAGCTTCACACCTTGGAATGGCTGAAGAAAATGTTTTGGAGGAAGCCAAGAGTTTCACCACCAAAAGGCTAAGATATTTCTCAGCTGGGAAAATGGATAATACTTTGTTTGGTAAGCAAGTGAAACAATCACTGGAAGTTCCACTGTATTGGAGGATGCCAAGATCTGAAGCTAGGAATTTCATTGATCTCTACCAAATGGATGAGACAAAGAGTGTGACTTTGCTTGAGTTGGCTAAGTTGGATTATAATCTGGTCCAATCTGTGCATCAAAATGAGCTTAAGGAGTTGGGAAGGT 40594566

HSP 2 Score: 472.016 bits (255), Expect = 1.036e-130
Identity = 259/261 (99.23%), Postives = 259/261 (99.23%), Query Frame = 1

Query:      974 AGTGGTTAAATCTCTGCAAATCATATCTTGTAGAAGCAAGGTGGTTTTATAATGATTATACACCAAGTTTGAATGAATACTTGGAAAATTCATCTACTTCAGTTGGTGGTCATGCAGCTATAGTTCATGCTTGTATTTTACTCTTAGATGGCTCCATACCCGAAACCTTACTGGATTACAATTTCAACCATTTTCACTCTAAGCTGATTTATTGGTCATCTCTTATAACAAGGCTTAGTGATGATTTAGGAACTTCAAAGG 1234
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 40595983 AGTGGTTAAATCTCTGCAAATCATATCTTGTAGAAGCAAGGTGGTTTTATAATGATTATACACCAAGTTTGAATGAATACTTGGAAAATTCATCTACTTCAGTTGGTGGTCATGCAGCTATAGTTCATGCTTGTATTTTAATCTTAGATGGCTCCATACCCGAAACCTTACTGGATTACAATTTCAACCATTTTCACTCTAAGCTGATTTATTGGTCATCTCTCATAACAAGGCTTAGTGATGATTTAGGAACTTCAAAGG 40596243

HSP 3 Score: 420.31 bits (227), Expect = 3.805e-115
Identity = 229/230 (99.57%), Postives = 229/230 (99.57%), Query Frame = 1

Query:     1232 AGGATGAGCTTAAAAGAGGAGATGTGAAGAAATCAGTGGAGTGCTACATGGCAGAGAAAGGAATATGGGAAGAAGAAGAAGCAATAAATCACATAAAAGAATTGAGAAGAAATTCATGGAAAATGGTGAACAAGGAGATAATAATTGGGAATAATTGCCTGCCAAAAATAATGGTGAAGATGTGCTTGAACATGGCAAGAACTGCTCAATTCATATTCCAACATGGTGAT 1461
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40596337 AGGATGAGCTTAAAAGAGGAGATGTGAAGAAATCAGTGGAGTGCTACATGGCAGAGAAAGGAATATGGGAAGAAGAAGAAGCAATAAATCACATAAAAGAATTGAGAAGAAATTCATGGAAAATGGTGAACAAGGAGATAATAATTGGGAATAATTGCTTGCCAAAAATAATGGTGAAGATGTGCTTGAACATGGCAAGAACTGCTCAATTCATATTCCAACATGGTGAT 40596566

HSP 4 Score: 412.923 bits (223), Expect = 6.367e-113
Identity = 231/235 (98.30%), Postives = 231/235 (98.30%), Query Frame = 1

Query:        1 CAAGAGTTGAAGCAAGTTACGAGTACTTCACTTAGAACCACAAAAGACCCTTGTATTCTCTTGAAGCTTATTGATTCTATCCAAAGGTTGGGACTCGAATATCACTTCGAAAATGAGATTGAAGAAGCTGTTTCTTTCATTTACGCACATAATGATCAAACTACTAGTAATGATCTCTTCATGACAGCACTTAGATTTCGTATTCTTAGGCAACATGGCTTATTTGTTGGCTCAG 235
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40593868 CAAGAGTTGAAGCAAGTTACGAGTACTTCACTTAGAACCACAAAAGACCCTTGTATTCTCTTAAAGCTTATTGATTCTATCCAAAGGTTGGGACTCGAATATCACTTCGAAAATGAGATTAAAGATGCTGTTTCTTTCATTTACGCACATAATGATCAAACTACCAGTAATGATCTCTTCATGACAGCACTTAGATTTCGTATTCTTAGGCAACATGGCTTATTTGTTGGCTCAG 40594102

HSP 5 Score: 403.69 bits (218), Expect = 3.832e-110
Identity = 220/221 (99.55%), Postives = 220/221 (99.55%), Query Frame = 1

Query:      613 AGGTGGTGGGAAAATTTGGGATTCAAGAAAAATCTACCTTTTGCAAGAGATCGTGTGGTGGAGAACTATTTGTGGGCCATGGGAATCGTATCTGAGCCACAGTTCTCCAAATGCAGGATAGGCTTAACCAAGTTCGTTTGCATATTAACAGCAATAGATGATGTTTATGACATATATGGATCATTAGATGAGCTTGAACTTTTCACAAATGCAGTAGAAAG 833
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40594705 AGGTGGTGGGAAAATTTGGGATTCAAGAAAAATCTACCTTTTGCAAGAGATCGTGTGGTGGAGAACTATTTGTGGGCCGTGGGAATCGTATCTGAGCCACAGTTCTCCAAATGCAGGATAGGCTTAACCAAGTTCGTTTGCATATTAACAGCAATAGATGATGTTTATGACATATATGGATCATTAGATGAGCTTGAACTTTTCACAAATGCAGTAGAAAG 40594925

HSP 6 Score: 267.038 bits (144), Expect = 5.246e-69
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1

Query:      832 AGCTGGGACATAAGGGCAATAAGGGATGAATTTCCTCTTTATTTGAAAACATGCTATCTTGGCATGCTTAATTTTGGTAATGAAGTGATCGATGATGTTCTTCAAAACCATGGCTTGAATATTTCCTCCTACATTAAAGAAGAG 975
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40595030 AGCTGGGACATAAGGGCAATAAGGGATGAATTTCCTCTTTATTTGAAAACATGCTATCTTGGCATGCTTAATTTTGGTAATGAAGTGATCGATGATGTTCTTCAAAACCATGGCTTGAATATTTCCTCCTACATTAAAGAAGAG 40595173


Match Name	Summary
CM010798.2	E-Value: 1.036e-130, PID: 100.00 Description: Cannabis sativa cultivar Purple Kush chromosome 9, whole genome shotgun sequence [more]

blastn of TPS CDS against pkv5 mRNA

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 mRNA
Display provided by the neXtProt Feature Viewer

Show Results Table

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BLAST of TPS43 vs. Genbank
Match Name: PKGMv1-78333_t
Description: No definition line

HSP 1 Score: 1511.68 bits (818), Expect = 0.000e+0
Identity = 828/833 (99.40%), Postives = 828/833 (99.40%), Query Frame = 1

Query:        1 CAAGAGTTGAAGCAAGTTACGAGTACTTCACTTAGAACCACAAAAGACCCTTGTATTCTCTTGAAGCTTATTGATTCTATCCAAAGGTTGGGACTCGAATATCACTTCGAAAATGAGATTGAAGAAGCTGTTTCTTTCATTTACGCACATAATGATCAAACTACTAGTAATGATCTCTTCATGACAGCACTTAGATTTCGTATTCTTAGGCAACATGGCTTATTTGTTGGCTCAGATGTGTTTGACAGATTTAGAGGCAGAGATGGGAAATTCTTGGACAGCTTAAGCAGTAACAAGCATGGAATTTTGAGTTTGTATGAAGCTTCACACCTTGGAATGGCTGAAGAAAATGTTTTGGAGGAAGCCAAGAGTTTCACCACCAAAAGGCTAAGATATTTCTCAGCTGGGAAAATGGATAATACTTTGTTTGGTAAGCAAGTGAAACAATCACTGGAAGTTCCACTGTATTGGAGGATGCCAAGATCTGAAGCTAGGAATTTCATTGATCTCTACCAAATGGATGAGACAAAGAGTGTGACTTTGCTTGAGTTGGCTAAGTTGGATTATAATCTGGTCCAATCTGTGCATCAAAATGAGCTTAAGGAGTTGGGAAGGTGGTGGGAAAATTTGGGATTCAAGAAAAATCTACCTTTTGCAAGAGATCGTGTGGTGGAGAACTATTTGTGGGCCATGGGAATCGTATCTGAGCCACAGTTCTCCAAATGCAGGATAGGCTTAACCAAGTTCGTTTGCATATTAACAGCAATAGATGATGTTTATGACATATATGGATCATTAGATGAGCTTGAACTTTTCACAAATGCAGTAGAAAG 833
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:      232 CAAGAGTTGAAGCAAGTTACGAGTACTTCACTTAGAACCACAAAAGACCCTTGTATTCTCTTAAAGCTTATTGATTCTATCCAAAGGTTGGGACTCGAATATCACTTCGAAAATGAGATTAAAGATGCTGTTTCTTTCATTTACGCACATAATGATCAAACTACCAGTAATGATCTCTTCATGACAGCACTTAGATTTCGTATTCTTAGGCAACATGGCTTATTTGTTGGCTCAGATGTGTTTGACAGATTTAGAGGCAGAGATGGGAAATTCTTGGACAGCTTAAGCAGTAACAAGCATGGAATTTTGAGTTTGTATGAAGCTTCACACCTTGGAATGGCTGAAGAAAATGTTTTGGAGGAAGCCAAGAGTTTCACCACCAAAAGGCTAAGATATTTCTCAGCTGGGAAAATGGATAATACTTTGTTTGGTAAGCAAGTGAAACAATCACTGGAAGTTCCACTGTATTGGAGGATGCCAAGATCTGAAGCTAGGAATTTCATTGATCTCTACCAAATGGATGAGACAAAGAGTGTGACTTTGCTTGAGTTGGCTAAGTTGGATTATAATCTGGTCCAATCTGTGCATCAAAATGAGCTTAAGGAGTTGGGAAGGTGGTGGGAAAATTTGGGATTCAAGAAAAATCTACCTTTTGCAAGAGATCGTGTGGTGGAGAACTATTTGTGGGCCGTGGGAATCGTATCTGAGCCACAGTTCTCCAAATGCAGGATAGGCTTAACCAAGTTCGTTTGCATATTAACAGCAATAGATGATGTTTATGACATATATGGATCATTAGATGAGCTTGAACTTTTCACAAATGCAGTAGAAAG 1064

HSP 2 Score: 1147.89 bits (621), Expect = 0.000e+0
Identity = 627/630 (99.52%), Postives = 627/630 (99.52%), Query Frame = 1

Query:      832 AGCTGGGACATAAGGGCAATAAGGGATGAATTTCCTCTTTATTTGAAAACATGCTATCTTGGCATGCTTAATTTTGGTAATGAAGTGATCGATGATGTTCTTCAAAACCATGGCTTGAATATTTCCTCCTACATTAAAGAAGAGTGGTTAAATCTCTGCAAATCATATCTTGTAGAAGCAAGGTGGTTTTATAATGATTATACACCAAGTTTGAATGAATACTTGGAAAATTCATCTACTTCAGTTGGTGGTCATGCAGCTATAGTTCATGCTTGTATTTTACTCTTAGATGGCTCCATACCCGAAACCTTACTGGATTACAATTTCAACCATTTTCACTCTAAGCTGATTTATTGGTCATCTCTTATAACAAGGCTTAGTGATGATTTAGGAACTTCAAAGGATGAGCTTAAAAGAGGAGATGTGAAGAAATCAGTGGAGTGCTACATGGCAGAGAAAGGAATATGGGAAGAAGAAGAAGCAATAAATCACATAAAAGAATTGAGAAGAAATTCATGGAAAATGGTGAACAAGGAGATAATAATTGGGAATAATTGCCTGCCAAAAATAATGGTGAAGATGTGCTTGAACATGGCAAGAACTGCTCAATTCATATTCCAACATGGTGAT 1461
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:     1096 AGCTGGGACATAAGGGCAATAAGGGATGAATTTCCTCTTTATTTGAAAACATGCTATCTTGGCATGCTTAATTTTGGTAATGAAGTGATCGATGATGTTCTTCAAAACCATGGCTTGAATATTTCCTCCTACATTAAAGAAGAGTGGTTAAATCTCTGCAAATCATATCTTGTAGAAGCAAGGTGGTTTTATAATGATTATACACCAAGTTTGAATGAATACTTGGAAAATTCATCTACTTCAGTTGGTGGTCATGCAGCTATAGTTCATGCTTGTATTTTAATCTTAGATGGCTCCATACCCGAAACCTTACTGGATTACAATTTCAACCATTTTCACTCTAAGCTGATTTATTGGTCATCTCTCATAACAAGGCTTAGTGATGATTTAGGAACTTCAAAGGATGAGCTTAAAAGAGGAGATGTGAAGAAATCAGTGGAGTGCTACATGGCAGAGAAAGGAATATGGGAAGAAGAAGAAGCAATAAATCACATAAAAGAATTGAGAAGAAATTCATGGAAAATGGTGAACAAGGAGATAATAATTGGGAATAATTGCTTGCCAAAAATAATGGTGAAGATGTGCTTGAACATGGCAAGAACTGCTCAATTCATATTCCAACATGGTGAT 1725


Match Name	Summary
PKGMv1-78333_t	E-Value: 0.000e+0, PID: 99.40 Description: No definition line [more]

blastn of TPS CDS against cs10 genome

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 genome
Display provided by the neXtProt Feature Viewer

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BLAST of TPS43 vs. Genbank
Match Name: NC_044379.1
Description: Cannabis sativa chromosome 8, cs10, whole genome shotgun sequence

HSP 1 Score: 691.767 bits (374), Expect = 0.000e+0
Identity = 380/383 (99.22%), Postives = 380/383 (99.22%), Query Frame = 1

Query:      234 AGATGTGTTTGACAGATTTAGAGGCAGAGATGGGAAATTCTTGGACAGCTTAAGCAGTAACAAGCATGGAATTTTGAGTTTGTATGAAGCTTCACACCTTGGAATGGCTGAAGAAAATGTTTTGGAGGAAGCCAAGAGTTTCACCACCAAAAGGCTAAGATATTTCTCAGCTGGGAAAATGGATAATACTTTGTTTGGTAAGCAAGTGAAACAATCACTGGAAGTTCCACTGTATTGGAGGATGCCAAGATCTGAAGCTAGGAATTTCATTGATCTCTACCAAATGGATGAGACAAAGAGTGTGACTTTGCTTGAGTTGGCTAAGTTGGATTATAATCTGGTCCAATCTGTGCATCAAAATGAGCTTAAGGAGTTGGGAAGGT 616
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53240398 AGATGTGTTTGACAGATTTAGAGGCAGAGATGGGAAATTCTTGGACAGCTTAAGCAGTAACAAGCATGGAATTTTGAGTTTGTATGAAGCTTCACACCTTGGAATGCCTGAAGAAAATGTTTTGGAGGAAGCCAAGAGTTTCACCACCAAAAGGCTGAGATATTTCTCAGCTGGGAAAATGGATACTACTTTGTTTGGTAAGCAAGTGAAACAATCACTGGAAGTTCCACTGTATTGGAGGATGCCAAGATCTGAAGCTAGGAATTTCATTGATCTCTACCAAATGGATGAGACAAAGAGTGTGACTTTGCTTGAGTTGGCTAAGTTGGATTATAATCTGGTCCAATCTGTGCATCAAAATGAGCTTAAGGAGTTGGGAAGGT 53240780

HSP 2 Score: 483.096 bits (261), Expect = 4.701e-134
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 1

Query:      974 AGTGGTTAAATCTCTGCAAATCATATCTTGTAGAAGCAAGGTGGTTTTATAATGATTATACACCAAGTTTGAATGAATACTTGGAAAATTCATCTACTTCAGTTGGTGGTCATGCAGCTATAGTTCATGCTTGTATTTTACTCTTAGATGGCTCCATACCCGAAACCTTACTGGATTACAATTTCAACCATTTTCACTCTAAGCTGATTTATTGGTCATCTCTTATAACAAGGCTTAGTGATGATTTAGGAACTTCAAAGG 1234
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53242150 AGTGGTTAAATCTCTGCAAATCATATCTTGTAGAAGCAAGGTGGTTTTATAATGATTATACACCAAGTTTGAATGAATACTTGGAAAATTCATCTACTTCAGTTGGTGGTCATGCAGCTATAGTTCATGCTTGTATTTTACTCTTAGATGGCTCCATACCCGAAACCTTACTGGATTACAATTTCAACCATTTTCACTCTAAGCTGATTTATTGGTCATCTCTTATAACAAGGCTTAGTGATGATTTAGGAACTTCAAAGG 53242410

HSP 3 Score: 424.003 bits (229), Expect = 2.890e-116
Identity = 233/235 (99.15%), Postives = 233/235 (99.15%), Query Frame = 1

Query:        1 CAAGAGTTGAAGCAAGTTACGAGTACTTCACTTAGAACCACAAAAGACCCTTGTATTCTCTTGAAGCTTATTGATTCTATCCAAAGGTTGGGACTCGAATATCACTTCGAAAATGAGATTGAAGAAGCTGTTTCTTTCATTTACGCACATAATGATCAAACTACTAGTAATGATCTCTTCATGACAGCACTTAGATTTCGTATTCTTAGGCAACATGGCTTATTTGTTGGCTCAG 235
                ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53240072 CAAGAGTTGAAGCAAATTACGAGTACTTCACTTAGAACCACAAAAGACCCTTGTATTCTCTTGAAGCTTATTGATTCTATCCAAAGGTTGGGACTCGAATATCACTTCGAAAATGAGATTGAAGATGCTGTTTCTTTCATTTACGCACATAATGATCAAACTACTAGTAATGATCTCTTCATGACAGCACTTAGATTTCGTATTCTTAGGCAACATGGCTTATTTGTTGGCTCAG 53240306

HSP 4 Score: 420.31 bits (227), Expect = 3.738e-115
Identity = 229/230 (99.57%), Postives = 229/230 (99.57%), Query Frame = 1

Query:     1232 AGGATGAGCTTAAAAGAGGAGATGTGAAGAAATCAGTGGAGTGCTACATGGCAGAGAAAGGAATATGGGAAGAAGAAGAAGCAATAAATCACATAAAAGAATTGAGAAGAAATTCATGGAAAATGGTGAACAAGGAGATAATAATTGGGAATAATTGCCTGCCAAAAATAATGGTGAAGATGTGCTTGAACATGGCAAGAACTGCTCAATTCATATTCCAACATGGTGAT 1461
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53242507 AGGATGAGCTTAAAAGAGGAGATGTGAAGAAATCAGTGGAGTGCTACATGGCAGAGAAAGGAATATGGGAAGAAGAAGAAGCAATAAATCACATAAAAGAATTGAGAAGAAATTCATGGAAAATGGTGAACAAGGAGATAATAATTGGGAATAATTGCTTGCCAAAAATAATGGTGAAGATGTGCTTGAACATGGCAAGAACTGCTCAATTCATATTCCAACATGGTGAT 53242736

HSP 5 Score: 398.15 bits (215), Expect = 1.752e-108
Identity = 219/221 (99.10%), Postives = 219/221 (99.10%), Query Frame = 1

Query:      613 AGGTGGTGGGAAAATTTGGGATTCAAGAAAAATCTACCTTTTGCAAGAGATCGTGTGGTGGAGAACTATTTGTGGGCCATGGGAATCGTATCTGAGCCACAGTTCTCCAAATGCAGGATAGGCTTAACCAAGTTCGTTTGCATATTAACAGCAATAGATGATGTTTATGACATATATGGATCATTAGATGAGCTTGAACTTTTCACAAATGCAGTAGAAAG 833
                |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53240919 AGGTGGTGGGATGATTTGGGATTCAAGAAAAATCTACCTTTTGCAAGAGATCGTGTGGTGGAGAACTATTTGTGGGCCATGGGAATCGTATCTGAGCCACAGTTCTCCAAATGCAGGATAGGCTTAACCAAGTTCGTTTGCATATTAACAGCAATAGATGATGTTTATGACATATATGGATCATTAGATGAGCTTGAACTTTTCACAAATGCAGTAGAAAG 53241139

HSP 6 Score: 267.038 bits (144), Expect = 5.154e-69
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1

Query:      832 AGCTGGGACATAAGGGCAATAAGGGATGAATTTCCTCTTTATTTGAAAACATGCTATCTTGGCATGCTTAATTTTGGTAATGAAGTGATCGATGATGTTCTTCAAAACCATGGCTTGAATATTTCCTCCTACATTAAAGAAGAG 975
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53241244 AGCTGGGACATAAGGGCAATAAGGGATGAATTTCCTCTTTATTTGAAAACATGCTATCTTGGCATGCTTAATTTTGGTAATGAAGTGATCGATGATGTTCTTCAAAACCATGGCTTGAATATTTCCTCCTACATTAAAGAAGAG 53241387


Match Name	Summary
NC_044379.1	E-Value: 4.701e-134, PID: 99.22 Description: Cannabis sativa chromosome 8, cs10, whole genome shotgun sequence [more]

blastn of TPS CDS against cs10 mRNA

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 mRNA
Display provided by the neXtProt Feature Viewer

Show Results Table

[Close]

BLAST of TPS43 vs. Genbank
Match Name: XM_030628902.1
Description: PREDICTED: Cannabis sativa probable terpene synthase 9 (LOC115701179), mRNA

HSP 1 Score: 2654.76 bits (1437), Expect = 0.000e+0
Identity = 1453/1461 (99.45%), Postives = 1453/1461 (99.45%), Query Frame = 1

Query:        1 CAAGAGTTGAAGCAAGTTACGAGTACTTCACTTAGAACCACAAAAGACCCTTGTATTCTCTTGAAGCTTATTGATTCTATCCAAAGGTTGGGACTCGAATATCACTTCGAAAATGAGATTGAAGAAGCTGTTTCTTTCATTTACGCACATAATGATCAAACTACTAGTAATGATCTCTTCATGACAGCACTTAGATTTCGTATTCTTAGGCAACATGGCTTATTTGTTGGCTCAGATGTGTTTGACAGATTTAGAGGCAGAGATGGGAAATTCTTGGACAGCTTAAGCAGTAACAAGCATGGAATTTTGAGTTTGTATGAAGCTTCACACCTTGGAATGGCTGAAGAAAATGTTTTGGAGGAAGCCAAGAGTTTCACCACCAAAAGGCTAAGATATTTCTCAGCTGGGAAAATGGATAATACTTTGTTTGGTAAGCAAGTGAAACAATCACTGGAAGTTCCACTGTATTGGAGGATGCCAAGATCTGAAGCTAGGAATTTCATTGATCTCTACCAAATGGATGAGACAAAGAGTGTGACTTTGCTTGAGTTGGCTAAGTTGGATTATAATCTGGTCCAATCTGTGCATCAAAATGAGCTTAAGGAGTTGGGAAGGTGGTGGGAAAATTTGGGATTCAAGAAAAATCTACCTTTTGCAAGAGATCGTGTGGTGGAGAACTATTTGTGGGCCATGGGAATCGTATCTGAGCCACAGTTCTCCAAATGCAGGATAGGCTTAACCAAGTTCGTTTGCATATTAACAGCAATAGATGATGTTTATGACATATATGGATCATTAGATGAGCTTGAACTTTTCACAAATGCAGTAGAAAGCTGGGACATAAGGGCAATAAGGGATGAATTTCCTCTTTATTTGAAAACATGCTATCTTGGCATGCTTAATTTTGGTAATGAAGTGATCGATGATGTTCTTCAAAACCATGGCTTGAATATTTCCTCCTACATTAAAGAAGAGTGGTTAAATCTCTGCAAATCATATCTTGTAGAAGCAAGGTGGTTTTATAATGATTATACACCAAGTTTGAATGAATACTTGGAAAATTCATCTACTTCAGTTGGTGGTCATGCAGCTATAGTTCATGCTTGTATTTTACTCTTAGATGGCTCCATACCCGAAACCTTACTGGATTACAATTTCAACCATTTTCACTCTAAGCTGATTTATTGGTCATCTCTTATAACAAGGCTTAGTGATGATTTAGGAACTTCAAAGGATGAGCTTAAAAGAGGAGATGTGAAGAAATCAGTGGAGTGCTACATGGCAGAGAAAGGAATATGGGAAGAAGAAGAAGCAATAAATCACATAAAAGAATTGAGAAGAAATTCATGGAAAATGGTGAACAAGGAGATAATAATTGGGAATAATTGCCTGCCAAAAATAATGGTGAAGATGTGCTTGAACATGGCAAGAACTGCTCAATTCATATTCCAACATGGTGAT 1461
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Sbjct:      315 CAAGAGTTGAAGCAAATTACGAGTACTTCACTTAGAACCACAAAAGACCCTTGTATTCTCTTGAAGCTTATTGATTCTATCCAAAGGTTGGGACTCGAATATCACTTCGAAAATGAGATTGAAGATGCTGTTTCTTTCATTTACGCACATAATGATCAAACTACTAGTAATGATCTCTTCATGACAGCACTTAGATTTCGTATTCTTAGGCAACATGGCTTATTTGTTGGCTCAGATGTGTTTGACAGATTTAGAGGCAGAGATGGGAAATTCTTGGACAGCTTAAGCAGTAACAAGCATGGAATTTTGAGTTTGTATGAAGCTTCACACCTTGGAATGCCTGAAGAAAATGTTTTGGAGGAAGCCAAGAGTTTCACCACCAAAAGGCTGAGATATTTCTCAGCTGGGAAAATGGATACTACTTTGTTTGGTAAGCAAGTGAAACAATCACTGGAAGTTCCACTGTATTGGAGGATGCCAAGATCTGAAGCTAGGAATTTCATTGATCTCTACCAAATGGATGAGACAAAGAGTGTGACTTTGCTTGAGTTGGCTAAGTTGGATTATAATCTGGTCCAATCTGTGCATCAAAATGAGCTTAAGGAGTTGGGAAGGTGGTGGGATGATTTGGGATTCAAGAAAAATCTACCTTTTGCAAGAGATCGTGTGGTGGAGAACTATTTGTGGGCCATGGGAATCGTATCTGAGCCACAGTTCTCCAAATGCAGGATAGGCTTAACCAAGTTCGTTTGCATATTAACAGCAATAGATGATGTTTATGACATATATGGATCATTAGATGAGCTTGAACTTTTCACAAATGCAGTAGAAAGCTGGGACATAAGGGCAATAAGGGATGAATTTCCTCTTTATTTGAAAACATGCTATCTTGGCATGCTTAATTTTGGTAATGAAGTGATCGATGATGTTCTTCAAAACCATGGCTTGAATATTTCCTCCTACATTAAAGAAGAGTGGTTAAATCTCTGCAAATCATATCTTGTAGAAGCAAGGTGGTTTTATAATGATTATACACCAAGTTTGAATGAATACTTGGAAAATTCATCTACTTCAGTTGGTGGTCATGCAGCTATAGTTCATGCTTGTATTTTACTCTTAGATGGCTCCATACCCGAAACCTTACTGGATTACAATTTCAACCATTTTCACTCTAAGCTGATTTATTGGTCATCTCTTATAACAAGGCTTAGTGATGATTTAGGAACTTCAAAGGATGAGCTTAAAAGAGGAGATGTGAAGAAATCAGTGGAGTGCTACATGGCAGAGAAAGGAATATGGGAAGAAGAAGAAGCAATAAATCACATAAAAGAATTGAGAAGAAATTCATGGAAAATGGTGAACAAGGAGATAATAATTGGGAATAATTGCTTGCCAAAAATAATGGTGAAGATGTGCTTGAACATGGCAAGAACTGCTCAATTCATATTCCAACATGGTGAT 1775


Match Name	Summary
XM_030628902.1	E-Value: 0.000e+0, PID: 99.45 Description: PREDICTED: Cannabis sativa probable terpene synthase 9 (LOC115701179), mRNA [more]

Interpro result TPS-TSA-THC Csativa

Performed on: 2021-09-02
Display provided by the neXtProt Feature Viewer


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..26
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 27..41
None	No IPR available	PANTHER	PTHR31225	FAMILY NOT NAMED	coord: 1..487
None	No IPR available	PANTHER	PTHR31225:SF98		coord: 1..487
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..16 score: 0.666
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 34..53
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 54..66
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..33
None	No IPR available	TMHMM	TMhelix		coord: 34..56
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 21..38
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..20
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 39..39
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10		coord: 3..487 e-value: 8.1E-176 score: 587.3
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 180..486
IPR001906	Terpene synthase, N-terminal domain	PFAM	PF01397	Terpene_synth	coord: 14..151 e-value: 8.0E-41 score: 139.8
IPR005630	Terpene synthase, metal-binding domain	PFAM	PF03936	Terpene_synth_C	coord: 182..451 e-value: 2.1E-94 score: 315.8
IPR036965	Terpene synthase, N-terminal domain superfamily	GENE3D	1.50.10.130		coord: 14..176 e-value: 8.1E-176 score: 587.3
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 5..175

TPS43

Reanalysis of 21 trichome RNA-Seq samples, PK-clones109 (TMM50 minvalue)

Interpro result TPS-TSA-THC Csativa

blastn of TPS CDS against cs10 mRNA

blastn of TPS CDS against cs10 genome

blastn of TPS CDS against pkv5 mRNA

blastn of TPS CDS against pkv5 genome

NCBI Download

Sequences

Sequence	CAAGAGTTGAAGCAAGTTACGAGTACTTCACTTAGAACCACAAAAGACCC TTGTATTCTCTTGAAGCTTATTGATTCTATCCAAAGGTTGGGACTCGAAT ATCACTTCGAAAATGAGATTGAAGAAGCTGTTTCTTTCATTTACGCACAT AATGATCAAACTACTAGTAATGATCTCTTCATGACAGCACTTAGATTTCG TATTCTTAGGCAACATGGCTTATTTGTTGGCTCAGATGTGTTTGACAGAT TTAGAGGCAGAGATGGGAAATTCTTGGACAGCTTAAGCAGTAACAAGCAT GGAATTTTGAGTTTGTATGAAGCTTCACACCTTGGAATGGCTGAAGAAAA TGTTTTGGAGGAAGCCAAGAGTTTCACCACCAAAAGGCTAAGATATTTCT CAGCTGGGAAAATGGATAATACTTTGTTTGGTAAGCAAGTGAAACAATCA CTGGAAGTTCCACTGTATTGGAGGATGCCAAGATCTGAAGCTAGGAATTT CATTGATCTCTACCAAATGGATGAGACAAAGAGTGTGACTTTGCTTGAGT TGGCTAAGTTGGATTATAATCTGGTCCAATCTGTGCATCAAAATGAGCTT AAGGAGTTGGGAAGGTGGTGGGAAAATTTGGGATTCAAGAAAAATCTACC TTTTGCAAGAGATCGTGTGGTGGAGAACTATTTGTGGGCCATGGGAATCG TATCTGAGCCACAGTTCTCCAAATGCAGGATAGGCTTAACCAAGTTCGTT TGCATATTAACAGCAATAGATGATGTTTATGACATATATGGATCATTAGA TGAGCTTGAACTTTTCACAAATGCAGTAGAAAGCTGGGACATAAGGGCAA TAAGGGATGAATTTCCTCTTTATTTGAAAACATGCTATCTTGGCATGCTT AATTTTGGTAATGAAGTGATCGATGATGTTCTTCAAAACCATGGCTTGAA TATTTCCTCCTACATTAAAGAAGAGTGGTTAAATCTCTGCAAATCATATC TTGTAGAAGCAAGGTGGTTTTATAATGATTATACACCAAGTTTGAATGAA TACTTGGAAAATTCATCTACTTCAGTTGGTGGTCATGCAGCTATAGTTCA TGCTTGTATTTTACTCTTAGATGGCTCCATACCCGAAACCTTACTGGATT ACAATTTCAACCATTTTCACTCTAAGCTGATTTATTGGTCATCTCTTATA ACAAGGCTTAGTGATGATTTAGGAACTTCAAAGGATGAGCTTAAAAGAGG AGATGTGAAGAAATCAGTGGAGTGCTACATGGCAGAGAAAGGAATATGGG AAGAAGAAGAAGCAATAAATCACATAAAAGAATTGAGAAGAAATTCATGG AAAATGGTGAACAAGGAGATAATAATTGGGAATAATTGCCTGCCAAAAAT AATGGTGAAGATGTGCTTGAACATGGCAAGAACTGCTCAATTCATATTCC AACATGGTGAT
Sequence Length	1461
Sequence Checksum	67c9cfa79ed4dc3d057632d565159209

Sequence

CAAGAGTTGAAGCAAGTTACGAGTACTTCACTTAGAACCACAAAAGACCC
TTGTATTCTCTTGAAGCTTATTGATTCTATCCAAAGGTTGGGACTCGAAT
ATCACTTCGAAAATGAGATTGAAGAAGCTGTTTCTTTCATTTACGCACAT
AATGATCAAACTACTAGTAATGATCTCTTCATGACAGCACTTAGATTTCG
TATTCTTAGGCAACATGGCTTATTTGTTGGCTCAGATGTGTTTGACAGAT
TTAGAGGCAGAGATGGGAAATTCTTGGACAGCTTAAGCAGTAACAAGCAT
GGAATTTTGAGTTTGTATGAAGCTTCACACCTTGGAATGGCTGAAGAAAA
TGTTTTGGAGGAAGCCAAGAGTTTCACCACCAAAAGGCTAAGATATTTCT
CAGCTGGGAAAATGGATAATACTTTGTTTGGTAAGCAAGTGAAACAATCA
CTGGAAGTTCCACTGTATTGGAGGATGCCAAGATCTGAAGCTAGGAATTT
CATTGATCTCTACCAAATGGATGAGACAAAGAGTGTGACTTTGCTTGAGT
TGGCTAAGTTGGATTATAATCTGGTCCAATCTGTGCATCAAAATGAGCTT
AAGGAGTTGGGAAGGTGGTGGGAAAATTTGGGATTCAAGAAAAATCTACC
TTTTGCAAGAGATCGTGTGGTGGAGAACTATTTGTGGGCCATGGGAATCG
TATCTGAGCCACAGTTCTCCAAATGCAGGATAGGCTTAACCAAGTTCGTT
TGCATATTAACAGCAATAGATGATGTTTATGACATATATGGATCATTAGA
TGAGCTTGAACTTTTCACAAATGCAGTAGAAAGCTGGGACATAAGGGCAA
TAAGGGATGAATTTCCTCTTTATTTGAAAACATGCTATCTTGGCATGCTT
AATTTTGGTAATGAAGTGATCGATGATGTTCTTCAAAACCATGGCTTGAA
TATTTCCTCCTACATTAAAGAAGAGTGGTTAAATCTCTGCAAATCATATC
TTGTAGAAGCAAGGTGGTTTTATAATGATTATACACCAAGTTTGAATGAA
TACTTGGAAAATTCATCTACTTCAGTTGGTGGTCATGCAGCTATAGTTCA
TGCTTGTATTTTACTCTTAGATGGCTCCATACCCGAAACCTTACTGGATT
ACAATTTCAACCATTTTCACTCTAAGCTGATTTATTGGTCATCTCTTATA
ACAAGGCTTAGTGATGATTTAGGAACTTCAAAGGATGAGCTTAAAAGAGG
AGATGTGAAGAAATCAGTGGAGTGCTACATGGCAGAGAAAGGAATATGGG
AAGAAGAAGAAGCAATAAATCACATAAAAGAATTGAGAAGAAATTCATGG
AAAATGGTGAACAAGGAGATAATAATTGGGAATAATTGCCTGCCAAAAAT
AATGGTGAAGATGTGCTTGAACATGGCAAGAACTGCTCAATTCATATTCC
AACATGGTGAT

Sequence Length

1461

Sequence Checksum

67c9cfa79ed4dc3d057632d565159209

Summary

Resource Type	mRNA
Organism	Cannabis sativa L.
Name	TPS43
Identifier	TPS43
Time Accessioned	Saturday, December 21, 2024 - 12:35
Time Last Modified	Saturday, December 21, 2024 - 12:35