TPS62 | ICGRC

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Sequences

Summary

Annotations

This record has the following annotations.
Term	Name	Definition
GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai]
GO:0016829	lyase activity
GO:0010333	terpene synthase activity	Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. [EC:4.2.3.-, GOC:tair_curators]
INTERPRO:IPR008930	Terpenoid_cyclase/PrenylTrfase
INTERPRO:IPR001906	Terpene_synth_N
INTERPRO:IPR005630	Terpene_synthase_metal-bd
INTERPRO:IPR008949	Isoprenoid_synthase_dom_sf
INTERPRO:IPR036965	Terpene_synth_N_sf

Click a tab below to view blast alignments.

blastn of TPS CDS against pkv5 genome

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 genome
Display provided by the neXtProt Feature Viewer

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BLAST of TPS62 vs. Genbank
Match Name: CM010796.2
Description: Cannabis sativa cultivar Purple Kush chromosome 5, whole genome shotgun sequence

HSP 1 Score: 686.227 bits (371), Expect = 0.000e+0
Identity = 381/386 (98.70%), Postives = 381/386 (98.70%), Query Frame = 1

Query:      250 GATATTTTCAACAAGTACAAGGACAATAATAAGGGTTGTTTCGACACAAGGCTAAGAGAGGACATCAAGGGTTTGCTGAGCTTATATGAAGCCTCCCATCTATGCATAGAGGGAGAAAATATCCTTGATGAAGCTGCTTTATTTAGTGCTCAACACTTGGAAGCGTCCATGACACGTCTTCATCGTTATGATCAATATCAGGCCAAATATGTGGCAACTACACTTCAAAATCCCACTCACAAAAGTTTATCCAAGTTCACAGCCAAGGACCTTTTTGGTGTCTATCCCAGTCAGAATGGGTACATAAATTTGTTTCAACAACTAGCAAAAGTTGAATTTAATAGAGTTCAGTCCCTGCATAGAATGGAAATTGATAAAGTCACCAG 635
                |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 10520642 GATATTTTCAACAAGTACAAGGACAATAATAACGGTTGTTTCGACACGAGGCTAAGAGAGGACATCAAGGGTTTGCTGAGCTTATATGAAGCCTCCCATCTATGCATAGAGGGAGAAAATATCCTTGATGAAGCTGCTTTATTTAGTGCTCAACACTTGGAAGCGTCCATGACACGTCTTCATCGTTATGATCAATATCAGGCCAAATTTGTGGCAACTACACTTCAAAATCCCACTCACAAAAGTTTATCCAAGTTCACAGCCAAGGACCTTTTTGGTGTCTATCCCAGTGAGAATGGGTACATAAATTTGTTTCAACAACTAGCAAAAGTTGAATTTAATAGAGTTCAGTCCCTGCATAGAATGGAAATTGATCAAGTCACCAG 10520257

HSP 2 Score: 497.869 bits (269), Expect = 1.773e-138
Identity = 271/272 (99.63%), Postives = 271/272 (99.63%), Query Frame = 1

Query:     1244 AGGATGAGAATCAAGAAGGACATGACGGATCTTATGTGGAGTGTTACATGAAGGAATTAGGAGGCAGTGTTGAAGATGCACGTGAGGAAATGATGGAAAAGATTTCAGATGCATGGAAGTGCCTCAACAAAGAATGCATACTTCGAAATCCAGCGTTTCCACCACCATTCCTCAAAGCTTCTCTCAATCTCGCAAGATTAGTTCCTTTGATGTATAATTATGATCACAACCAACGCCTACCCCACTTGGAAGAACATATCAAATCTTTGTTA 1515
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10518322 AGGATGAGAATCAAGAAGGACATGACGGATCTTATGTGGAGTGTTACATGAAGGAATTAGGAGGCAGTGTTGAAGATGCACGTGAGGAAATGATGGAAAAGATTTCAGATGCATGGAAGTGCCTCAATAAAGAATGCATACTTCGAAATCCAGCGTTTCCACCACCATTCCTCAAAGCTTCTCTCAATCTCGCAAGATTAGTTCCTTTGATGTATAATTATGATCACAACCAACGCCTACCCCACTTGGAAGAACATATCAAATCTTTGTTA 10518051

HSP 3 Score: 470.169 bits (254), Expect = 3.866e-130
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 1

Query:      993 GTGGGCAAGTTTGTGCGAAGCCTTTTTAGTAGAGGCAAAATGGTTTGCATCAAGGCACGTACCAAAGGCAAAAGAATACTTGGAAAATGGTGTGGTCAGCTCAGGAGTGCACGTAGTTCTGGTTCATATATTTGTTCTCTTGGATGAAACCAGTCTCACCCAAAAGACACTGGATTTTGTGGAAAACATGCCTTCCATCATTACTTCTACAGCATCGATTCTTAGGCTTTGGGATGACTTTGGTAGTGCCAAGG 1246
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10519457 GTGGGCAAGTTTGTGCGAAGCCTTTTTAGTAGAGGCAAAATGGTTTGCATCAAGGCACGTACCAAAGGCAAAAGAATACTTGGAAAATGGTGTGGTCAGCTCAGGAGTGCACGTAGTTCTGGTTCATATATTTGTTCTCTTGGATGAAACCAGTCTCACCCAAAAGACACTGGATTTTGTGGAAAACATGCCTTCCATCATTACTTCTACAGCATCGATTCTTAGGCTTTGGGATGACTTTGGTAGTGCCAAGG 10519204

HSP 4 Score: 431.39 bits (233), Expect = 1.824e-118
Identity = 245/250 (98.00%), Postives = 245/250 (98.00%), Query Frame = 1

Query:        1 GATTTAGATAAATACAGGGACGTTTTAAGAAAAGCAGACCCATTTGATGAAGGTCTGAAGATGATTGATGCTATTCAACGGCTAGGAATTGACTATATCTTCGAGGAAGAGATTGATAAAATTATACAAAGCCAGTCTGCTTATAAGTTTTTTAGAGAATTCGAGCATGATCATCATCATCATCAAGATCTGTATGATGTAGCTCTTCGTTTTCGACTCTTGAGACAACACGGTCACTTCGTTCCTGCTG 250
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 10521317 GATTTAGATAAATACAGGGACGTTTTAAGAAAAGCAGACCCATTTGATGAAGGTCTGAAGATGATTGATGCTATTCAACGGCTAGGAATTGACTATATCTTCGAGGAAGAGATTGATAAAATTATACAAAGCCAGTCTGCTTATAAGTTTTTTAGAGAATTCGAACATGATCATCATCATCA---AGATCTGTATGATGTAGCTCTTCGTTTTCGACTCTTGAGACAACACGGTCTCTTCGTTCCTGCTG 10521071

HSP 5 Score: 398.15 bits (215), Expect = 1.850e-108
Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 1

Query:      637 TGGTGGCGAGACATTGGTTTAGCTAAGGAATTAACTTTCGCAAGAGATCAACCGGTGAAGTGGTATATTTGGTCCATGGCCTGCCTAACCGATCCAATCTTGTCGAAACAAAGGGTTGCGCTTACAAAATCCATTTCGTTTATCTATGTAATAGATGATATTTTCGACATGTACAGTTCACTTGATGAACTCATTCTCTTCACCCAGGCTGTCTCTAG 854
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10520079 TGGTGGCGAGACATTGGTTTAGCTAAGGAATTAACTTTCGCAAGAGATCAACCGGTGAAGTGGTATATTTGGTCCATGGCCTGCCTAACCGATCCAACCTTGTCGAAACAAAGGGTTGCGCTTACAAAATCCATTTCGTTTATCTATGTAATAGATGATATTTTCGACATGTACAGTTCACTTGATGAACTCATTCTCTTCACCCAGGCTGTCTCTAG 10519862

HSP 6 Score: 250.418 bits (135), Expect = 5.482e-64
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 1

Query:      853 AGCTGGGAATATAGTGCTATAGAAAAACTTCCAGACTCCATGAAGACATGCTTTAAAGCCCTAGATAATATGATCAATGAGTCTAGCCATACGATCTATCAAAAGCGTGGATGGAGCCCTTTACACTCTCTTCGGAAGACG 993
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10519707 AGCTGGGAATATAGTGCTATACAAAAACTTCCAGACTCCATGAAGACATGCTTTAGAGCCCTAGATAATATGATCAATGAGTCTAGCCATACGATCTATCAAAAGCGTGGATGGAGCCCTTTACACTCTCTTCGGAAGACG 10519567


Match Name	Summary
CM010796.2	E-Value: 1.773e-138, PID: 98.70 Description: Cannabis sativa cultivar Purple Kush chromosome 5, whole genome shotgun sequence [more]

blastn of TPS CDS against pkv5 mRNA

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 mRNA
Display provided by the neXtProt Feature Viewer

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BLAST of TPS62 vs. Genbank
Match Name: PKGMv1-56105_t
Description: No definition line

HSP 1 Score: 1133.12 bits (613), Expect = 0.000e+0
Identity = 617/619 (99.68%), Postives = 617/619 (99.68%), Query Frame = 1

Query:      897 GACATGCTTTAAAGCCCTAGATAATATGATCAATGAGTCTAGCCATACGATCTATCAAAAGCGTGGATGGAGCCCTTTACACTCTCTTCGGAAGACGTGGGCAAGTTTGTGCGAAGCCTTTTTAGTAGAGGCAAAATGGTTTGCATCAAGGCACGTACCAAAGGCAAAAGAATACTTGGAAAATGGTGTGGTCAGCTCAGGAGTGCACGTAGTTCTGGTTCATATATTTGTTCTCTTGGATGAAACCAGTCTCACCCAAAAGACACTGGATTTTGTGGAAAACATGCCTTCCATCATTACTTCTACAGCATCGATTCTTAGGCTTTGGGATGACTTTGGTAGTGCCAAGGATGAGAATCAAGAAGGACATGACGGATCTTATGTGGAGTGTTACATGAAGGAATTAGGAGGCAGTGTTGAAGATGCACGTGAGGAAATGATGGAAAAGATTTCAGATGCATGGAAGTGCCTCAACAAAGAATGCATACTTCGAAATCCAGCGTTTCCACCACCATTCCTCAAAGCTTCTCTCAATCTCGCAAGATTAGTTCCTTTGATGTATAATTATGATCACAACCAACGCCTACCCCACTTGGAAGAACATATCAAATCTTTGTTA 1515
                ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:      522 GACATGCTTTAGAGCCCTAGATAATATGATCAATGAGTCTAGCCATACGATCTATCAAAAGCGTGGATGGAGCCCTTTACACTCTCTTCGGAAGACGTGGGCAAGTTTGTGCGAAGCCTTTTTAGTAGAGGCAAAATGGTTTGCATCAAGGCACGTACCAAAGGCAAAAGAATACTTGGAAAATGGTGTGGTCAGCTCAGGAGTGCACGTAGTTCTGGTTCATATATTTGTTCTCTTGGATGAAACCAGTCTCACCCAAAAGACACTGGATTTTGTGGAAAACATGCCTTCCATCATTACTTCTACAGCATCGATTCTTAGGCTTTGGGATGACTTTGGTAGTGCCAAGGATGAGAATCAAGAAGGACATGACGGATCTTATGTGGAGTGTTACATGAAGGAATTAGGAGGCAGTGTTGAAGATGCACGTGAGGAAATGATGGAAAAGATTTCAGATGCATGGAAGTGCCTCAATAAAGAATGCATACTTCGAAATCCAGCGTTTCCACCACCATTCCTCAAAGCTTCTCTCAATCTCGCAAGATTAGTTCCTTTGATGTATAATTATGATCACAACCAACGCCTACCCCACTTGGAAGAACATATCAAATCTTTGTTA 1140

HSP 2 Score: 436.93 bits (236), Expect = 5.171e-121
Identity = 238/239 (99.58%), Postives = 238/239 (99.58%), Query Frame = 1

Query:      300 GCTAAGAGAGGACATCAAGGGTTTGCTGAGCTTATATGAAGCCTCCCATCTATGCATAGAGGGAGAAAATATCCTTGATGAAGCTGCTTTATTTAGTGCTCAACACTTGGAAGCGTCCATGACACGTCTTCATCGTTATGATCAATATCAGGCCAAATATGTGGCAACTACACTTCAAAATCCCACTCACAAAAGTTTATCCAAGTTCACAGCCAAGGACCTTTTTGGTGTCTATCCCA 538
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:      192 GCTAAGAGAGGACATCAAGGGTTTGCTGAGCTTATATGAAGCCTCCCATCTATGCATAGAGGGAGAAAATATCCTTGATGAAGCTGCTTTATTTAGTGCTCAACACTTGGAAGCGTCCATGACACGTCTTCATCGTTATGATCAATATCAGGCCAAATTTGTGGCAACTACACTTCAAAATCCCACTCACAAAAGTTTATCCAAGTTCACAGCCAAGGACCTTTTTGGTGTCTATCCCA 430

HSP 3 Score: 320.591 bits (173), Expect = 5.434e-86
Identity = 185/190 (97.37%), Postives = 185/190 (97.37%), Query Frame = 1

Query:       61 ATGATTGATGCTATTCAACGGCTAGGAATTGACTATATCTTCGAGGAAGAGATTGATAAAATTATACAAAGCCAGTCTGCTTATAAGTTTTTTAGAGAATTCGAGCATGATCATCATCATCATCAAGATCTGTATGATGTAGCTCTTCGTTTTCGACTCTTGAGACAACACGGTCACTTCGTTCCTGCTG 250
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct:        1 ATGATTGATGCTATTCAACGGCTAGGAATTGACTATATCTTCGAGGAAGAGATTGATAAAATTATACAAAGCCAGTCTGCTTATAAGTTTTTTAGAGAATTCGAACATG---ATCATCATCATCAAGATCTGTATGATGTAGCTCTTCGTTTTCGACTCTTGAGACAACACGGTCTCTTCGTTCCTGCTG 187

HSP 4 Score: 165.472 bits (89), Expect = 2.694e-39
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1

Query:      659 CTAAGGAATTAACTTTCGCAAGAGATCAACCGGTGAAGTGGTATATTTGGTCCATGGCCTGCCTAACCGATCCAATCTTGTCGAAACAAAGG 750
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct:      431 CTAAGGAATTAACTTTCGCAAGAGATCAACCGGTGAAGTGGTATATTTGGTCCATGGCCTGCCTAACCGATCCAACCTTGTCGAAACAAAGG 522


Match Name	Summary
PKGMv1-56105_t	E-Value: 5.171e-121, PID: 99.68 Description: No definition line [more]

blastn of TPS CDS against cs10 genome

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 genome
Display provided by the neXtProt Feature Viewer

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BLAST of TPS62 vs. Genbank
Match Name: NC_044371.1
Description: Cannabis sativa chromosome 1, cs10, whole genome shotgun sequence

HSP 1 Score: 664.068 bits (359), Expect = 0.000e+0
Identity = 377/386 (97.67%), Postives = 377/386 (97.67%), Query Frame = 1

Query:      250 GATATTTTCAACAAGTACAAGGACAATAATAAGGGTTGTTTCGACACAAGGCTAAGAGAGGACATCAAGGGTTTGCTGAGCTTATATGAAGCCTCCCATCTATGCATAGAGGGAGAAAATATCCTTGATGAAGCTGCTTTATTTAGTGCTCAACACTTGGAAGCGTCCATGACACGTCTTCATCGTTATGATCAATATCAGGCCAAATATGTGGCAACTACACTTCAAAATCCCACTCACAAAAGTTTATCCAAGTTCACAGCCAAGGACCTTTTTGGTGTCTATCCCAGTCAGAATGGGTACATAAATTTGTTTCAACAACTAGCAAAAGTTGAATTTAATAGAGTTCAGTCCCTGCATAGAATGGAAATTGATAAAGTCACCAG 635
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 93280177 GATATTTTCAACAAGTACAAGGACAATAATAAGGGTTGTTTCGACACAAGGCTAAGAGAGGACATCAAGGGTTTGGTGAGCTTATATGAAGCCTCCCATCTATGCATGGAGGGGGAAAATATCCTTGATGAAGCTGCTTTATTTAGTGCTCAACACTTGGAAGCGTCCATGACACATCTTCATCGTTATGATCAATATCAGGCCAAATTTGTGGCAACTACACTTCAAAATCCCACTCACAAAAGTTTATCCAAGTTCACAGCCAAGGACCTTTTTGGTGTCTATCCCAGTGAGAATGGGTACATAAATTTGTTTAAACAACTAGCAAAAGTTGAATTTACTAGAGTTCAGTCCCTGCATAGAATGGAAATTGATAAAGTAACCAG 93279792

HSP 2 Score: 503.409 bits (272), Expect = 3.744e-140
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 1

Query:     1244 AGGATGAGAATCAAGAAGGACATGACGGATCTTATGTGGAGTGTTACATGAAGGAATTAGGAGGCAGTGTTGAAGATGCACGTGAGGAAATGATGGAAAAGATTTCAGATGCATGGAAGTGCCTCAACAAAGAATGCATACTTCGAAATCCAGCGTTTCCACCACCATTCCTCAAAGCTTCTCTCAATCTCGCAAGATTAGTTCCTTTGATGTATAATTATGATCACAACCAACGCCTACCCCACTTGGAAGAACATATCAAATCTTTGTTA 1515
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93272923 AGGATGAGAATCAAGAAGGACATGACGGATCTTATGTGGAGTGTTACATGAAGGAATTAGGAGGCAGTGTTGAAGATGCACGTGAGGAAATGATGGAAAAGATTTCAGATGCATGGAAGTGCCTCAACAAAGAATGCATACTTCGAAATCCAGCGTTTCCACCACCATTCCTCAAAGCTTCTCTCAATCTCGCAAGATTAGTTCCTTTGATGTATAATTATGATCACAACCAACGCCTACCCCACTTGGAAGAACATATCAAATCTTTGTTA 93272652

HSP 3 Score: 449.856 bits (243), Expect = 4.948e-124
Identity = 248/250 (99.20%), Postives = 248/250 (99.20%), Query Frame = 1

Query:        1 GATTTAGATAAATACAGGGACGTTTTAAGAAAAGCAGACCCATTTGATGAAGGTCTGAAGATGATTGATGCTATTCAACGGCTAGGAATTGACTATATCTTCGAGGAAGAGATTGATAAAATTATACAAAGCCAGTCTGCTTATAAGTTTTTTAGAGAATTCGAGCATGATCATCATCATCATCAAGATCTGTATGATGTAGCTCTTCGTTTTCGACTCTTGAGACAACACGGTCACTTCGTTCCTGCTG 250
                ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93280859 GATTTAGATAAATACAGGGACGTTT-AAGAAAAGCAGACCCATTTGATGAAGGTCTGAAGATGATTGATGCTATTCAACGGCTAGGAATTGACTATATCTTCGAGGAAGAGATTGATAAAATTATACAAAGCCAGTCTGCTTATAAGTTTTTTAGAGAATTCGAACATGATCATCATCATCATCAAGATCTGTATGATGTAGCTCTTCGTTTTCGACTCTTGAGACAACACGGTCACTTCGTTCCTGCTG 93280611

HSP 4 Score: 433.236 bits (234), Expect = 4.983e-119
Identity = 236/237 (99.58%), Postives = 236/237 (99.58%), Query Frame = 1

Query:      993 GTGGGCAAGTTTGTGCGAAGCCTTTTTAGTAGAGGCAAAATGGTTTGCATCAAGGCACGTACCAAAGGCAAAAGAATACTTGGAAAATGGTGTGGTCAGCTCAGGAGTGCACGTAGTTCTGGTTCATATATTTGTTCTCTTGGATGAAACCAGTCTCACCCAAAAGACACTGGATTTTGTGGAAAACATGCCTTCCATCATTACTTCTACAGCATCGATTCTTAGGCTTTGGGATGA 1229
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93279130 GTGGGCAAGTTTGTGCGAAGCCTTTTTAGTAGAGGCAAAATGGTTTGCATCAAGGCACGTACCAAAGGCAAAAGAATACTTGGAAAATGGTGTGGTCAGCTCAGGAGTTCACGTAGTTCTGGTTCATATATTTGTTCTCTTGGATGAAACCAGTCTCACCCAAAAGACACTGGATTTTGTGGAAAACATGCCTTCCATCATTACTTCTACAGCATCGATTCTTAGGCTTTGGGATGA 93278894

HSP 5 Score: 398.15 bits (215), Expect = 1.818e-108
Identity = 219/221 (99.10%), Postives = 219/221 (99.10%), Query Frame = 1

Query:      634 AGATGGTGGCGAGACATTGGTTTAGCTAAGGAATTAACTTTCGCAAGAGATCAACCGGTGAAGTGGTATATTTGGTCCATGGCCTGCCTAACCGATCCAATCTTGTCGAAACAAAGGGTTGCGCTTACAAAATCCATTTCGTTTATCTATGTAATAGATGATATTTTCGACATGTACAGTTCACTTGATGAACTCATTCTCTTCACCCAGGCTGTCTCTAG 854
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93279697 AGATGGTGGCGAGACATTGGTTTAGCTAAGGAATTAACTTTCGCAAGAGATCAACCGGTGAAGTGGTATATTTGGTCCATGGCCTGCCTAACCGATCCAATCTTGTCGAAACAAAGGGTTGCGCTTACAAAATCCATTTCGTTTATCTATGTCATAGATGATATTTTCGACATATACAGTTCACTTGATGAACTCATTCTCTTCACCCAGGCTGTCTCTAG 93279477

HSP 6 Score: 239.338 bits (129), Expect = 1.166e-60
Identity = 137/141 (97.16%), Postives = 137/141 (97.16%), Query Frame = 1

Query:      853 AGCTGGGAATATAGTGCTATAGAAAAACTTCCAGACTCCATGAAGACATGCTTTAAAGCCCTAGATAATATGATCAATGAGTCTAGCCATACGATCTATCAAAAGCGTGGATGGAGCCCTTTACACTCTCTTCGGAAGACG 993
                |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 93279380 AGCTGGAAATATAGTGCTATGGAAAAGCTTCCAGACTCCATGAAGACATGCTTTAAAGCCCTAGATAATATGATCAATGAGTCTAGCCATACGATCTATCAAAAGCGTGGATGGAACCCTTTACACTCTCTTCGGAAGACG 93279240


Match Name	Summary
NC_044371.1	E-Value: 3.744e-140, PID: 97.67 Description: Cannabis sativa chromosome 1, cs10, whole genome shotgun sequence [more]

blastn of TPS CDS against cs10 mRNA

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 mRNA
Display provided by the neXtProt Feature Viewer

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BLAST of TPS62 vs. Genbank
Match Name: XM_030635402.1
Description: PREDICTED: Cannabis sativa (3S,6E)-nerolidol synthase 1 (LOC115707440), mRNA

HSP 1 Score: 2697.23 bits (1460), Expect = 0.000e+0
Identity = 1497/1515 (98.81%), Postives = 1497/1515 (98.81%), Query Frame = 1

Query:        1 GATTTAGATAAATACAGGGACGTTTTAAGAAAAGCAGACCCATTTGATGAAGGTCTGAAGATGATTGATGCTATTCAACGGCTAGGAATTGACTATATCTTCGAGGAAGAGATTGATAAAATTATACAAAGCCAGTCTGCTTATAAGTTTTTTAGAGAATTCGAGCATGATCATCATCATCATCAAGATCTGTATGATGTAGCTCTTCGTTTTCGACTCTTGAGACAACACGGTCACTTCGTTCCTGCTGATATTTTCAACAAGTACAAGGACAATAATAAGGGTTGTTTCGACACAAGGCTAAGAGAGGACATCAAGGGTTTGCTGAGCTTATATGAAGCCTCCCATCTATGCATAGAGGGAGAAAATATCCTTGATGAAGCTGCTTTATTTAGTGCTCAACACTTGGAAGCGTCCATGACACGTCTTCATCGTTATGATCAATATCAGGCCAAATATGTGGCAACTACACTTCAAAATCCCACTCACAAAAGTTTATCCAAGTTCACAGCCAAGGACCTTTTTGGTGTCTATCCCAGTCAGAATGGGTACATAAATTTGTTTCAACAACTAGCAAAAGTTGAATTTAATAGAGTTCAGTCCCTGCATAGAATGGAAATTGATAAAGTCACCAGATGGTGGCGAGACATTGGTTTAGCTAAGGAATTAACTTTCGCAAGAGATCAACCGGTGAAGTGGTATATTTGGTCCATGGCCTGCCTAACCGATCCAATCTTGTCGAAACAAAGGGTTGCGCTTACAAAATCCATTTCGTTTATCTATGTAATAGATGATATTTTCGACATGTACAGTTCACTTGATGAACTCATTCTCTTCACCCAGGCTGTCTCTAGCTGGGAATATAGTGCTATAGAAAAACTTCCAGACTCCATGAAGACATGCTTTAAAGCCCTAGATAATATGATCAATGAGTCTAGCCATACGATCTATCAAAAGCGTGGATGGAGCCCTTTACACTCTCTTCGGAAGACGTGGGCAAGTTTGTGCGAAGCCTTTTTAGTAGAGGCAAAATGGTTTGCATCAAGGCACGTACCAAAGGCAAAAGAATACTTGGAAAATGGTGTGGTCAGCTCAGGAGTGCACGTAGTTCTGGTTCATATATTTGTTCTCTTGGATGAAACCAGTCTCACCCAAAAGACACTGGATTTTGTGGAAAACATGCCTTCCATCATTACTTCTACAGCATCGATTCTTAGGCTTTGGGATGACTTTGGTAGTGCCAAGGATGAGAATCAAGAAGGACATGACGGATCTTATGTGGAGTGTTACATGAAGGAATTAGGAGGCAGTGTTGAAGATGCACGTGAGGAAATGATGGAAAAGATTTCAGATGCATGGAAGTGCCTCAACAAAGAATGCATACTTCGAAATCCAGCGTTTCCACCACCATTCCTCAAAGCTTCTCTCAATCTCGCAAGATTAGTTCCTTTGATGTATAATTATGATCACAACCAACGCCTACCCCACTTGGAAGAACATATCAAATCTTTGTTA 1515
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Sbjct:      315 GATTTAGATAAATACAGGGACG-TTTAAGAAAAGCAGACCCATTTGATGAAGGTCTGAAGATGATTGATGCTATTCAACGGCTAGGAATTGACTATATCTTCGAGGAAGAGATTGATAAAATTATACAAAGCCAGTCTGCTTATAAGTTTTTTAGAGAATTCGAACATGATCATCATCATCATCAAGATCTGTATGATGTAGCTCTTCGTTTTCGACTCTTGAGACAACACGGTCACTTCGTTCCTGCTGATATTTTCAACAAGTACAAGGACAATAATAAGGGTTGTTTCGACACAAGGCTAAGAGAGGACATCAAGGGTTTGGTGAGCTTATATGAAGCCTCCCATCTATGCATGGAGGGGGAAAATATCCTTGATGAAGCTGCTTTATTTAGTGCTCAACACTTGGAAGCGTCCATGACACATCTTCATCGTTATGATCAATATCAGGCCAAATTTGTGGCAACTACACTTCAAAATCCCACTCACAAAAGTTTATCCAAGTTCACAGCCAAGGACCTTTTTGGTGTCTATCCCAGTGAGAATGGGTACATAAATTTGTTTAAACAACTAGCAAAAGTTGAATTTACTAGAGTTCAGTCCCTGCATAGAATGGAAATTGATAAAGTAACCAGATGGTGGCGAGACATTGGTTTAGCTAAGGAATTAACTTTCGCAAGAGATCAACCGGTGAAGTGGTATATTTGGTCCATGGCCTGCCTAACCGATCCAATCTTGTCGAAACAAAGGGTTGCGCTTACAAAATCCATTTCGTTTATCTATGTCATAGATGATATTTTCGACATATACAGTTCACTTGATGAACTCATTCTCTTCACCCAGGCTGTCTCTAGCTGGAAATATAGTGCTATGGAAAAGCTTCCAGACTCCATGAAGACATGCTTTAAAGCCCTAGATAATATGATCAATGAGTCTAGCCATACGATCTATCAAAAGCGTGGATGGAACCCTTTACACTCTCTTCGGAAGACGTGGGCAAGTTTGTGCGAAGCCTTTTTAGTAGAGGCAAAATGGTTTGCATCAAGGCACGTACCAAAGGCAAAAGAATACTTGGAAAATGGTGTGGTCAGCTCAGGAGTTCACGTAGTTCTGGTTCATATATTTGTTCTCTTGGATGAAACCAGTCTCACCCAAAAGACACTGGATTTTGTGGAAAACATGCCTTCCATCATTACTTCTACAGCATCGATTCTTAGGCTTTGGGATGACTTTGGTAGTGCCAAGGATGAGAATCAAGAAGGACATGACGGATCTTATGTGGAGTGTTACATGAAGGAATTAGGAGGCAGTGTTGAAGATGCACGTGAGGAAATGATGGAAAAGATTTCAGATGCATGGAAGTGCCTCAACAAAGAATGCATACTTCGAAATCCAGCGTTTCCACCACCATTCCTCAAAGCTTCTCTCAATCTCGCAAGATTAGTTCCTTTGATGTATAATTATGATCACAACCAACGCCTACCCCACTTGGAAGAACATATCAAATCTTTGTTA 1828


Match Name	Summary
XM_030635402.1	E-Value: 0.000e+0, PID: 98.81 Description: PREDICTED: Cannabis sativa (3S,6E)-nerolidol synthase 1 (LOC115707440), mRNA [more]

Interpro result TPS-TSA-THC Csativa

Performed on: 2021-09-02
Display provided by the neXtProt Feature Viewer


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036965	Terpene synthase, N-terminal domain superfamily	GENE3D	1.50.10.130		coord: 12..183 e-value: 1.9E-168 score: 563.0
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10		coord: 184..489 e-value: 1.9E-168 score: 563.0
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 189..496
IPR005630	Terpene synthase, metal-binding domain	PFAM	PF03936	Terpene_synth_C	coord: 190..454 e-value: 1.3E-86 score: 290.3
IPR001906	Terpene synthase, N-terminal domain	PFAM	PF01397	Terpene_synth	coord: 13..143 e-value: 7.8E-41 score: 139.9
None	No IPR available	PANTHER	PTHR31225	FAMILY NOT NAMED	coord: 14..505
None	No IPR available	PANTHER	PTHR31225:SF99		coord: 14..505
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 34..53
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..33
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 54..72
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 26..68
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..25
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..26 score: 0.646
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 24..50
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..23
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..11 score: 0.485
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..44
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 45..61
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 15..181

TPS62

Reanalysis of 21 trichome RNA-Seq samples, FN-clones109 (TMM50 minvalue)

Reanalysis of 21 trichome RNA-Seq samples, PK-clones109 (TMM50 minvalue)

Interpro result TPS-TSA-THC Csativa

blastn of TPS CDS against cs10 mRNA

blastn of TPS CDS against cs10 genome

blastn of TPS CDS against pkv5 mRNA

blastn of TPS CDS against pkv5 genome

NCBI Download

Sequences

Sequence	GATTTAGATAAATACAGGGACGTTTTAAGAAAAGCAGACCCATTTGATGA AGGTCTGAAGATGATTGATGCTATTCAACGGCTAGGAATTGACTATATCT TCGAGGAAGAGATTGATAAAATTATACAAAGCCAGTCTGCTTATAAGTTT TTTAGAGAATTCGAGCATGATCATCATCATCATCAAGATCTGTATGATGT AGCTCTTCGTTTTCGACTCTTGAGACAACACGGTCACTTCGTTCCTGCTG ATATTTTCAACAAGTACAAGGACAATAATAAGGGTTGTTTCGACACAAGG CTAAGAGAGGACATCAAGGGTTTGCTGAGCTTATATGAAGCCTCCCATCT ATGCATAGAGGGAGAAAATATCCTTGATGAAGCTGCTTTATTTAGTGCTC AACACTTGGAAGCGTCCATGACACGTCTTCATCGTTATGATCAATATCAG GCCAAATATGTGGCAACTACACTTCAAAATCCCACTCACAAAAGTTTATC CAAGTTCACAGCCAAGGACCTTTTTGGTGTCTATCCCAGTCAGAATGGGT ACATAAATTTGTTTCAACAACTAGCAAAAGTTGAATTTAATAGAGTTCAG TCCCTGCATAGAATGGAAATTGATAAAGTCACCAGATGGTGGCGAGACAT TGGTTTAGCTAAGGAATTAACTTTCGCAAGAGATCAACCGGTGAAGTGGT ATATTTGGTCCATGGCCTGCCTAACCGATCCAATCTTGTCGAAACAAAGG GTTGCGCTTACAAAATCCATTTCGTTTATCTATGTAATAGATGATATTTT CGACATGTACAGTTCACTTGATGAACTCATTCTCTTCACCCAGGCTGTCT CTAGCTGGGAATATAGTGCTATAGAAAAACTTCCAGACTCCATGAAGACA TGCTTTAAAGCCCTAGATAATATGATCAATGAGTCTAGCCATACGATCTA TCAAAAGCGTGGATGGAGCCCTTTACACTCTCTTCGGAAGACGTGGGCAA GTTTGTGCGAAGCCTTTTTAGTAGAGGCAAAATGGTTTGCATCAAGGCAC GTACCAAAGGCAAAAGAATACTTGGAAAATGGTGTGGTCAGCTCAGGAGT GCACGTAGTTCTGGTTCATATATTTGTTCTCTTGGATGAAACCAGTCTCA CCCAAAAGACACTGGATTTTGTGGAAAACATGCCTTCCATCATTACTTCT ACAGCATCGATTCTTAGGCTTTGGGATGACTTTGGTAGTGCCAAGGATGA GAATCAAGAAGGACATGACGGATCTTATGTGGAGTGTTACATGAAGGAAT TAGGAGGCAGTGTTGAAGATGCACGTGAGGAAATGATGGAAAAGATTTCA GATGCATGGAAGTGCCTCAACAAAGAATGCATACTTCGAAATCCAGCGTT TCCACCACCATTCCTCAAAGCTTCTCTCAATCTCGCAAGATTAGTTCCTT TGATGTATAATTATGATCACAACCAACGCCTACCCCACTTGGAAGAACAT ATCAAATCTTTGTTA
Sequence Length	1515
Sequence Checksum	ba5d1d99e84348dc7b3f260e59b1224d

Sequence

GATTTAGATAAATACAGGGACGTTTTAAGAAAAGCAGACCCATTTGATGA
AGGTCTGAAGATGATTGATGCTATTCAACGGCTAGGAATTGACTATATCT
TCGAGGAAGAGATTGATAAAATTATACAAAGCCAGTCTGCTTATAAGTTT
TTTAGAGAATTCGAGCATGATCATCATCATCATCAAGATCTGTATGATGT
AGCTCTTCGTTTTCGACTCTTGAGACAACACGGTCACTTCGTTCCTGCTG
ATATTTTCAACAAGTACAAGGACAATAATAAGGGTTGTTTCGACACAAGG
CTAAGAGAGGACATCAAGGGTTTGCTGAGCTTATATGAAGCCTCCCATCT
ATGCATAGAGGGAGAAAATATCCTTGATGAAGCTGCTTTATTTAGTGCTC
AACACTTGGAAGCGTCCATGACACGTCTTCATCGTTATGATCAATATCAG
GCCAAATATGTGGCAACTACACTTCAAAATCCCACTCACAAAAGTTTATC
CAAGTTCACAGCCAAGGACCTTTTTGGTGTCTATCCCAGTCAGAATGGGT
ACATAAATTTGTTTCAACAACTAGCAAAAGTTGAATTTAATAGAGTTCAG
TCCCTGCATAGAATGGAAATTGATAAAGTCACCAGATGGTGGCGAGACAT
TGGTTTAGCTAAGGAATTAACTTTCGCAAGAGATCAACCGGTGAAGTGGT
ATATTTGGTCCATGGCCTGCCTAACCGATCCAATCTTGTCGAAACAAAGG
GTTGCGCTTACAAAATCCATTTCGTTTATCTATGTAATAGATGATATTTT
CGACATGTACAGTTCACTTGATGAACTCATTCTCTTCACCCAGGCTGTCT
CTAGCTGGGAATATAGTGCTATAGAAAAACTTCCAGACTCCATGAAGACA
TGCTTTAAAGCCCTAGATAATATGATCAATGAGTCTAGCCATACGATCTA
TCAAAAGCGTGGATGGAGCCCTTTACACTCTCTTCGGAAGACGTGGGCAA
GTTTGTGCGAAGCCTTTTTAGTAGAGGCAAAATGGTTTGCATCAAGGCAC
GTACCAAAGGCAAAAGAATACTTGGAAAATGGTGTGGTCAGCTCAGGAGT
GCACGTAGTTCTGGTTCATATATTTGTTCTCTTGGATGAAACCAGTCTCA
CCCAAAAGACACTGGATTTTGTGGAAAACATGCCTTCCATCATTACTTCT
ACAGCATCGATTCTTAGGCTTTGGGATGACTTTGGTAGTGCCAAGGATGA
GAATCAAGAAGGACATGACGGATCTTATGTGGAGTGTTACATGAAGGAAT
TAGGAGGCAGTGTTGAAGATGCACGTGAGGAAATGATGGAAAAGATTTCA
GATGCATGGAAGTGCCTCAACAAAGAATGCATACTTCGAAATCCAGCGTT
TCCACCACCATTCCTCAAAGCTTCTCTCAATCTCGCAAGATTAGTTCCTT
TGATGTATAATTATGATCACAACCAACGCCTACCCCACTTGGAAGAACAT
ATCAAATCTTTGTTA

Sequence Length

1515

Sequence Checksum

ba5d1d99e84348dc7b3f260e59b1224d

Summary

Resource Type	mRNA
Organism	Cannabis sativa L.
Name	TPS62
Identifier	TPS62
Time Accessioned	Thursday, November 21, 2024 - 09:53
Time Last Modified	Thursday, November 21, 2024 - 09:53