TPS9 | ICGRC

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Summary

Annotations

This record has the following annotations.
Term	Name	Definition
GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai]
GO:0016829	lyase activity
GO:0010333	terpene synthase activity	Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. [EC:4.2.3.-, GOC:tair_curators]
INTERPRO:IPR008930	Terpenoid_cyclase/PrenylTrfase
INTERPRO:IPR001906	Terpene_synth_N
INTERPRO:IPR008949	Isoprenoid_synthase_dom_sf
INTERPRO:IPR036965	Terpene_synth_N_sf
INTERPRO:IPR005630	Terpene_synthase_metal-bd

Click a tab below to view blast alignments.

blastn of TPS CDS against pkv5 genome

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 genome
Display provided by the neXtProt Feature Viewer

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BLAST of TPS9 vs. Genbank
Match Name: CM010792.2
Description: Cannabis sativa cultivar Purple Kush chromosome 2, whole genome shotgun sequence

HSP 1 Score: 632.674 bits (342), Expect = 5.139e-179
Identity = 366/378 (96.83%), Postives = 366/378 (96.83%), Query Frame = 1

Query:      398 ATATATTTAAAATATTTAAAGATGAGAAAGGGAATTTTAAGGAGTGCTTGATAACTGACATTCCCGGTTTGTTGAGCTTATATGAGGCCTCACAGTTAAGCTATATTGGAGAGAATATATTAGATGAATCACTTGCTTTCACCACCACTCACCTTCATCAGTTTGTGAAAAATGAAAAAACACATCCATTATCAAATGAAGTATTACTAGCCTTGCAGAGACCTATAAGAAAGAGCCTAGATAGGCTCCACGCTAGGCATTACATTTCATCTTACGAAAACAAGATTTGTCATAACAAAACATTGCTAGAACTTGCAAAGTTGGATTTCAATCTATTACAATGTTTGCATAGAAAAGAGCTTAGTGAAATTTCCAGGT 775
                |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 54898585 ATATATTTAAAATATTTAAAGATGAGCAAGGGAATTTTAAGGAGTGCTTGATAACTGACATTCTTGGTTTGCTGAGCTTATATGAGGCCTCACATTTAAGCTATATTGGCGAGAATATATTAAATGAAGCACTTGCTTTCACCACCACTCACCTTCATCAGTTTGTGAAAAATGAAAAAACACATCCATTATCAAATGAAGTATTACTAGCCTTGCAGAGACCTATAAGAAAGAGCCTAGAGAGGCTCCACGCCAGGCATTACATTTCATCTTACGAAAACAAGATTTCTCATAACAAAACATTGCTAGAACTTGCAAAGTTGGATTTCAATCTATTACAATGTTTGCATAGAAAAGAGCTTAGTCAAATTTCCAGGT 54898962

HSP 2 Score: 518.182 bits (280), Expect = 1.501e-144
Identity = 286/289 (98.96%), Postives = 286/289 (98.96%), Query Frame = 1

Query:     1379 AGTTTGAGCAACAAAGAGATCATTCACCGTCTACCGTTGAGAGTTACATGAGGCAATATGGGGTGTCAGAGCAAGAGGCATGTGATGAGCTAAGAAAGCAAGTGGTTAATTCATGGAAAGAAATAAACAAAGCATTCCTCAGGCCTTCTAATGTGCCTTATCCAGTTTTATCTCTTGTTCTCAATTTTTCGAGAGTAATGGATCTTCTCTACAAAGATGGTGATGGCTATACGCATGTTGGAAAAGAGACAAAAAATAGTGTTGTTGCGTTACTTATAGATCAAATCCC 1667
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54899972 AGTTTGAGCAACAAAGAGATCATTCACCGTCTACCGTTGAGAGTTACATGAGGCAATATGGGGTGTCAGAACAAGAGGCATGTGATGAGCTAAGAAAGCAAGTGATTAATTCATGGAAAGAAATAAACAAAGCATTCCTCAGGCCTTCTAATGTGCCTTATCCAGTTTTATCTCTTGTTCTCAATTTTTCGAGAGTAATGGATCTTCTCTACAAAGATGGTGATGGCTATACGCATATTGGAAAAGAGACAAAAAATAGTGTTGTTGCGTTACTTATAGATCAAATCCC 54900260

HSP 3 Score: 490.482 bits (265), Expect = 3.273e-136
Identity = 278/284 (97.89%), Postives = 278/284 (97.89%), Query Frame = 1

Query:      125 ATGTA-AGCTATAAAAAGCAGCGAGTTGACGAATTAAAGGAAGTGGTAAGGAGAGAGGTATTTTTAGAATGTTATGATAATGTTTCATATGTGTTGAAGATAGTGGATGATGTTCAACGTTTGGGATTGTCGTATCATTTTGAAAGTGAAATAGAAAGAGCGCTACAACACATTTACGATAACACTATTCATCAAAACCACAAAGATGAAGATTTACATGACACTTCTACCCGCTTTAGACTATTGCGCCAACATGGATTTATGGTTTCATCTAATATATTTAA 407
                ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||
Sbjct: 54896754 ATGTAGAGCTATAAAAAGCAGCGAGTTGACGAATTAAAGGAAGTGGTAAGGAGAGAGGTATTTTTAGAATGTTATGATAATGTTTCATATGTGTTGAAGATAGTGGATGATGTTCAACGTTTGGGATTGTCGTATCATTTTGAAAATGAAATAGAAAAAGCGCTACAACACATTTACGATAACACTATTCATCAAAACCACAAAGATGAAGATTTACATGACACTTCTACCCGCTTTAGACTATTGCGCCAACATGGATTTATGGTTTCATCTAGTAAGTTTAA 54897037

HSP 4 Score: 440.623 bits (238), Expect = 3.343e-121
Identity = 249/254 (98.03%), Postives = 249/254 (98.03%), Query Frame = 1

Query:     1128 AGC-GATGAAAAGATTACTTGGAGCATATTTCAGTGAAGCTCGATGGTTGCACGAAGGATATTTCCCTAGTTTCGATGAGCATTTGAAGGTTTCATTGATTTCTTGTGGATACACCATGATGATAGTGACCTCTTTAATTGGAATGAAAGATTGTGTAACAAAACAAGATTTTGAGTGGCTCTCAAAAGACCCCAAGATAATGAGAGATTGCAATATCCTTTGTAGGTTCATGGATGACATAGTCTCTCATAAG 1380
                ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54899630 AGCAGATGAAAAGATTACTTGGAGCATATTTCAGTGAAGCTCGATGGTTGCACGAAGGATATTTCCCTAGCTTCGATGAGCATTTGAAGGTTTCTTTGATTTCTTGTGGATACACCATGATGATAGTGACCTCTTTAATTGGCATGAAAGATTGTGTAACAAAGCAAGATTTTGAGTGGCTCTCAAAAGACCCCAAGATAATGAGAGATTGCAATATCCTTTGTAGGTTCATGGATGACATAGTCTCTCATAAG 54899883

HSP 5 Score: 390.763 bits (211), Expect = 3.415e-106
Identity = 219/223 (98.21%), Postives = 219/223 (98.21%), Query Frame = 1

Query:      772 AGGTGGTGGAAAGAAATAGACTTTGTACACAAACTACCTTTTGCAAGAGATAGGATTGTGGAGCTATACCTTTGGCTATTAGGAGTTTTTCATGAACCTGAATTTTCACTTGCAAGAAATATTTCAACAAAAGTCATTGCATTGGCCTCAGTTGCAGATGATATTTATGATGCATATGGTACATTTGAAGAGCTTGAGCTCCTTACTGAATCAATTAATAGGT 994
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54899051 AGGTGGTGGAAAGAAATAGACTTTGTACACAAACTACCTTTTGCAAGAGATAGGATTGTGGAGCTATACCTTTGGCTATTAGGAGTTTTTCATGAACCTGAATTGTCACTGGCAAGAATTATTTCAACAAAAGTTATTGCATTGGCCTCAGTTGCAGATGATATTTATGATGCATATGGTACATTTGAAGAGCTTGAGCTCCTTACTGAATCAATTAATAGGT 54899273

HSP 6 Score: 252.265 bits (136), Expect = 1.681e-64
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 1

Query:      990 TAGGTGGGACTTAAATTGTGCGGATCAACTACGTCCAGAATGTTTACAGACATTTTATAAGGTTCTTTTAAATTGTTATGAAGAATTTGAGAGTGAGCTTGGAAAGGAGGAAAGTTACAAAGTTTACTATGCAAGAGAAGCG 1131
                |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 54899398 TAGGTGGGACTTAAATTGTGCGGATCAACTTCGTCCAGAATGTTTACAGACATTTTATAAGGTTCTTTTAAATTGTTATGAAGAATTTGAGAGTGAGCTTGGAAAGGAGGAAAGTTACAAAGTTTACTACGCAAGAGAAGCG 54899539

HSP 7 Score: 231.952 bits (125), Expect = 2.190e-58
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1

Query:        1 ATGTCATATCAAGTTTTAGCCTCATCACAAAATGACAAAGTATCAAAAATTGTTCGTCCAACAACAACTTATCAACCTTCTATTTGGGGGGAGAGATTTCTCCAATATAGTATTTCAGACCAAGA 125
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54894188 ATGTCATATCAAGTTTTAGCCTCATCACAAAATGACAAAGTATCAAAAATTGTTCGTCCAACAACAACTTATCAACCTTCTATTTGGGGGGAGAGATTTCTCCAATATAGTATTTCAGACCAAGA 54894312

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BLAST of TPS9 vs. Genbank
Match Name: CM010794.2
Description: Cannabis sativa cultivar Purple Kush chromosome 4, whole genome shotgun sequence

HSP 1 Score: 267.038 bits (144), Expect = 6.004e-69
Identity = 192/216 (88.89%), Postives = 192/216 (88.89%), Query Frame = 1

Query:      772 AGGTGGTGGAAAGAAATAGACTTTGTACACAAACTACCTTTTGCAAGAGATAGGATTGTGGAGCTATACCTTTGGCTATTAGGAGTTTTTCATGAACCTGAATTTTCACTTGCAAGAAATATTTCAACAAAAGTCATTGCATTGGCCTCAGTTGCAGATGATATTTATGATGCATATGGTACATTTGAAGAGCTTGAGCTCCTTACTGAATCAATT 987
                ||||||||||||||| ||||||| | | |||||||||| ||||||||| |||||||||||||||||||||||||| || ||||||| |||||||||||| |||| || ||||||||||| || | ||  |||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |||||
Sbjct:   916336 AGGTGGTGGAAAGAATTAGACTTGGCAAACAAACTACCATTTGCAAGAAATAGGATTGTGGAGCTATACCTTTGGATACTAGGAGTCTTTCATGAACCTCAATTCTCTCTTGCAAGAAAAATCTTAATTAAAGCCATTTCAATGGCCTCAGTTGCAGATGATATTTATGATGCATATGGTACATTTGAAGAACTTGAGCTCCTCACCGAAGCAATT 916551


Match Name	Summary
CM010792.2	E-Value: 5.139e-179, PID: 96.83 Description: Cannabis sativa cultivar Purple Kush chromosome 2, whole genome shotgun sequence [more]
CM010794.2	E-Value: 6.004e-69, PID: 88.89 Description: Cannabis sativa cultivar Purple Kush chromosome 4, whole genome shotgun sequence [more]

blastn of TPS CDS against pkv5 mRNA

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 mRNA
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BLAST of TPS9 vs. Genbank
Match Name: PKGMv1-32363_t
Description: No definition line

HSP 1 Score: 952.145 bits (515), Expect = 0.000e+0
Identity = 529/536 (98.69%), Postives = 529/536 (98.69%), Query Frame = 1

Query:     1132 ATGAAAAGATTACTTGGAGCATATTTCAGTGAAGCTCGATGGTTGCACGAAGGATATTTCCCTAGTTTCGATGAGCATTTGAAGGTTTCATTGATTTCTTGTGGATACACCATGATGATAGTGACCTCTTTAATTGGAATGAAAGATTGTGTAACAAAACAAGATTTTGAGTGGCTCTCAAAAGACCCCAAGATAATGAGAGATTGCAATATCCTTTGTAGGTTCATGGATGACATAGTCTCTCATAAGTTTGAGCAACAAAGAGATCATTCACCGTCTACCGTTGAGAGTTACATGAGGCAATATGGGGTGTCAGAGCAAGAGGCATGTGATGAGCTAAGAAAGCAAGTGGTTAATTCATGGAAAGAAATAAACAAAGCATTCCTCAGGCCTTCTAATGTGCCTTATCCAGTTTTATCTCTTGTTCTCAATTTTTCGAGAGTAATGGATCTTCTCTACAAAGATGGTGATGGCTATACGCATGTTGGAAAAGAGACAAAAAATAGTGTTGTTGCGTTACTTATAGATCAAATCCC 1667
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:        1 ATGAAAAGATTACTTGGAGCATATTTCAGTGAAGCTCGATGGTTGCACGAAGGATATTTCCCTAGCTTCGATGAGCATTTGAAGGTTTCTTTGATTTCTTGTGGATACACCATGATGATAGTGACCTCTTTAATTGGCATGAAAGATTGTGTAACAAAGCAAGATTTTGAGTGGCTCTCAAAAGACCCCAAGATAATGAGAGATTGCAATATCCTTTGTAGGTTCATGGATGACATAGTCTCTCATAAGTTTGAGCAACAAAGAGATCATTCACCGTCTACCGTTGAGAGTTACATGAGGCAATATGGGGTGTCAGAACAAGAGGCATGTGATGAGCTAAGAAAGCAAGTGATTAATTCATGGAAAGAAATAAACAAAGCATTCCTCAGGCCTTCTAATGTGCCTTATCCAGTTTTATCTCTTGTTCTCAATTTTTCGAGAGTAATGGATCTTCTCTACAAAGATGGTGATGGCTATACGCATATTGGAAAAGAGACAAAAAATAGTGTTGTTGCGTTACTTATAGATCAAATCCC 536

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BLAST of TPS9 vs. Genbank
Match Name: PKGMv1-57795_t
Description: No definition line

HSP 1 Score: 237.491 bits (128), Expect = 6.209e-61
Identity = 168/188 (89.36%), Postives = 168/188 (89.36%), Query Frame = 1

Query:      800 ACAAACTACCTTTTGCAAGAGATAGGATTGTGGAGCTATACCTTTGGCTATTAGGAGTTTTTCATGAACCTGAATTTTCACTTGCAAGAAATATTTCAACAAAAGTCATTGCATTGGCCTCAGTTGCAGATGATATTTATGATGCATATGGTACATTTGAAGAGCTTGAGCTCCTTACTGAATCAATT 987
                |||||||||| ||||||||| |||||||||||||||||||||||||| || ||||||| |||||||||||| |||| || ||||||||||| || | ||  |||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |||||
Sbjct:       35 ACAAACTACCATTTGCAAGAAATAGGATTGTGGAGCTATACCTTTGGATACTAGGAGTCTTTCATGAACCTCAATTCTCTCTTGCAAGAAAAATCTTAATTAAAGCCATTTCAATGGCCTCAGTTGCAGATGATATTTATGATGCATATGGTACATTTGAAGAACTTGAGCTCCTCACCGAAGCAATT 222


Match Name	Summary
PKGMv1-32363_t	E-Value: 0.000e+0, PID: 98.69 Description: No definition line [more]
PKGMv1-57795_t	E-Value: 6.209e-61, PID: 89.36 Description: No definition line [more]

blastn of TPS CDS against cs10 genome

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 genome
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BLAST of TPS9 vs. Genbank
Match Name: NC_044377.1
Description: Cannabis sativa chromosome 6, cs10, whole genome shotgun sequence

HSP 1 Score: 632.674 bits (342), Expect = 5.048e-179
Identity = 366/378 (96.83%), Postives = 366/378 (96.83%), Query Frame = 1

Query:      398 ATATATTTAAAATATTTAAAGATGAGAAAGGGAATTTTAAGGAGTGCTTGATAACTGACATTCCCGGTTTGTTGAGCTTATATGAGGCCTCACAGTTAAGCTATATTGGAGAGAATATATTAGATGAATCACTTGCTTTCACCACCACTCACCTTCATCAGTTTGTGAAAAATGAAAAAACACATCCATTATCAAATGAAGTATTACTAGCCTTGCAGAGACCTATAAGAAAGAGCCTAGATAGGCTCCACGCTAGGCATTACATTTCATCTTACGAAAACAAGATTTGTCATAACAAAACATTGCTAGAACTTGCAAAGTTGGATTTCAATCTATTACAATGTTTGCATAGAAAAGAGCTTAGTGAAATTTCCAGGT 775
                |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 21352512 ATATATTTAAAATATTTAAAGATGAGCAAGGGAATTTTAAGGAGTGCTTGATAACTGACATTCTTGGTTTGCTGAGCTTATATGAGGCCTCACATTTAAGCTATATTGGCGAGAATATATTAAATGAAGCACTTGCTTTCACCACCACTCACCTTCATCAGTTTGTGAAAAATGAAAAAACACATCCATTATCAAATGAAGTATTACTAGCCTTGCAGAGACCTATAAGAAAGAGCCTAGAGAGGCTCCACGCCAGGCATTACATTTCATCTTACGAAAACAAGATTTCTCATAACAAAACATTGCTAGAACTTGCAAAGTTGGATTTCAATCTATTACAATGTTTGCATAGAAAAGAGCTTAGTCAAATTTCCAGGT 21352889

HSP 2 Score: 518.182 bits (280), Expect = 1.475e-144
Identity = 286/289 (98.96%), Postives = 286/289 (98.96%), Query Frame = 1

Query:     1379 AGTTTGAGCAACAAAGAGATCATTCACCGTCTACCGTTGAGAGTTACATGAGGCAATATGGGGTGTCAGAGCAAGAGGCATGTGATGAGCTAAGAAAGCAAGTGGTTAATTCATGGAAAGAAATAAACAAAGCATTCCTCAGGCCTTCTAATGTGCCTTATCCAGTTTTATCTCTTGTTCTCAATTTTTCGAGAGTAATGGATCTTCTCTACAAAGATGGTGATGGCTATACGCATGTTGGAAAAGAGACAAAAAATAGTGTTGTTGCGTTACTTATAGATCAAATCCC 1667
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21353913 AGTTTGAGCAACAAAGAGATCATTCACCGTCTACCGTTGAGAGTTACATGAGGCAATATGGGGTGTCAGAACAAGAGGCATGTGATGAGCTAAGAAAGCAAGTGATTAATTCATGGAAAGAAATAAACAAAGCATTCCTCAGGCCTTCTAATGTGCCTTATCCAGTTTTATCTCTTGTTCTCAATTTTTCGAGAGTAATGGATCTTCTCTACAAAGATGGTGATGGCTATACGCATATTGGAAAAGAGACAAAAAATAGTGTTGTTGCGTTACTTATAGATCAAATCCC 21354201

HSP 3 Score: 490.482 bits (265), Expect = 3.215e-136
Identity = 278/284 (97.89%), Postives = 278/284 (97.89%), Query Frame = 1

Query:      125 ATGTA-AGCTATAAAAAGCAGCGAGTTGACGAATTAAAGGAAGTGGTAAGGAGAGAGGTATTTTTAGAATGTTATGATAATGTTTCATATGTGTTGAAGATAGTGGATGATGTTCAACGTTTGGGATTGTCGTATCATTTTGAAAGTGAAATAGAAAGAGCGCTACAACACATTTACGATAACACTATTCATCAAAACCACAAAGATGAAGATTTACATGACACTTCTACCCGCTTTAGACTATTGCGCCAACATGGATTTATGGTTTCATCTAATATATTTAA 407
                ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||
Sbjct: 21350675 ATGTAGAGCTATAAAAAGCAGCGAGTTGACGAATTAAAGGAAGTGGTAAGGAGAGAGGTATTTTTAGAATGTTATGATAATGTTTCATATGTGTTGAAGATAGTGGATGATGTTCAACGTTTGGGATTGTCGTATCATTTTGAAAATGAAATAGAAAAAGCGCTACAACACATTTACGATAACACTATTCATCAAAACCACAAAGATGAAGATTTACATGACACTTCTACCCGCTTTAGACTATTGCGCCAACATGGATTTATGGTTTCATCTAGTAAGTTTAA 21350958

HSP 4 Score: 440.623 bits (238), Expect = 3.284e-121
Identity = 249/254 (98.03%), Postives = 249/254 (98.03%), Query Frame = 1

Query:     1128 AGC-GATGAAAAGATTACTTGGAGCATATTTCAGTGAAGCTCGATGGTTGCACGAAGGATATTTCCCTAGTTTCGATGAGCATTTGAAGGTTTCATTGATTTCTTGTGGATACACCATGATGATAGTGACCTCTTTAATTGGAATGAAAGATTGTGTAACAAAACAAGATTTTGAGTGGCTCTCAAAAGACCCCAAGATAATGAGAGATTGCAATATCCTTTGTAGGTTCATGGATGACATAGTCTCTCATAAG 1380
                ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21353571 AGCAGATGAAAAGATTACTTGGAGCATATTTCAGTGAAGCTCGATGGTTGCACGAAGGATATTTCCCTAGCTTCGATGAGCATTTGAAGGTTTCTTTGATTTCTTGTGGATACACCATGATGATAGTGACCTCTTTAATTGGCATGAAAGATTGTGTAACAAAGCAAGATTTTGAGTGGCTCTCAAAAGACCCCAAGATAATGAGAGATTGCAATATCCTTTGTAGGTTCATGGATGACATAGTCTCTCATAAG 21353824

HSP 5 Score: 390.763 bits (211), Expect = 3.355e-106
Identity = 219/223 (98.21%), Postives = 219/223 (98.21%), Query Frame = 1

Query:      772 AGGTGGTGGAAAGAAATAGACTTTGTACACAAACTACCTTTTGCAAGAGATAGGATTGTGGAGCTATACCTTTGGCTATTAGGAGTTTTTCATGAACCTGAATTTTCACTTGCAAGAAATATTTCAACAAAAGTCATTGCATTGGCCTCAGTTGCAGATGATATTTATGATGCATATGGTACATTTGAAGAGCTTGAGCTCCTTACTGAATCAATTAATAGGT 994
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21352992 AGGTGGTGGAAAGAAATAGACTTTGTACACAAACTACCTTTTGCAAGAGATAGGATTGTGGAGCTATACCTTTGGCTATTAGGAGTTTTTCATGAACCTGAATTGTCACTGGCAAGAATTATTTCAACAAAAGTTATTGCATTGGCCTCAGTTGCAGATGATATTTATGATGCATATGGTACATTTGAAGAGCTTGAGCTCCTTACTGAATCAATTAATAGGT 21353214

HSP 6 Score: 252.265 bits (136), Expect = 1.652e-64
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 1

Query:      990 TAGGTGGGACTTAAATTGTGCGGATCAACTACGTCCAGAATGTTTACAGACATTTTATAAGGTTCTTTTAAATTGTTATGAAGAATTTGAGAGTGAGCTTGGAAAGGAGGAAAGTTACAAAGTTTACTATGCAAGAGAAGCG 1131
                |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 21353339 TAGGTGGGACTTAAATTGTGCGGATCAACTTCGTCCAGAATGTTTACAGACATTTTATAAGGTTCTTTTAAATTGTTATGAAGAATTTGAGAGTGAGCTTGGAAAGGAGGAAAGTTACAAAGTTTACTACGCAAGAGAAGCG 21353480

HSP 7 Score: 231.952 bits (125), Expect = 2.152e-58
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 1

Query:        1 ATGTCATATCAAGTTTTAGCCTCATCACAAAATGACAAAGTATCAAAAATTGTTCGTCCAACAACAACTTATCAACCTTCTATTTGGGGGGAGAGATTTCTCCAATATAGTATTTCAGACCAAGA 125
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21348087 ATGTCATATCAAGTTTTAGCCTCATCACAAAATGACAAAGTATCAAAAATTGTTCGTCCAACAACAACTTATCAACCTTCTATTTGGGGGGAGAGATTTCTCCAATATAGTATTTCAGACCAAGA 21348211


Match Name	Summary
NC_044377.1	E-Value: 5.048e-179, PID: 96.83 Description: Cannabis sativa chromosome 6, cs10, whole genome shotgun sequence [more]

blastn of TPS CDS against cs10 mRNA

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 mRNA
Display provided by the neXtProt Feature Viewer

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BLAST of TPS9 vs. Genbank
Match Name: XM_030655054.1
Description: PREDICTED: Cannabis sativa alpha-humulene synthase (LOC115725506), mRNA

HSP 1 Score: 2913.29 bits (1577), Expect = 0.000e+0
Identity = 1637/1667 (98.20%), Postives = 1637/1667 (98.20%), Query Frame = 1

Query:        1 ATGTCATATCAAGTTTTAGCCTCATCACAAAATGACAAAGTATCAAAAATTGTTCGTCCAACAACAACTTATCAACCTTCTATTTGGGGGGAGAGATTTCTCCAATATAGTATTTCAGACCAAGATGTAAGCTATAAAAAGCAGCGAGTTGACGAATTAAAGGAAGTGGTAAGGAGAGAGGTATTTTTAGAATGTTATGATAATGTTTCATATGTGTTGAAGATAGTGGATGATGTTCAACGTTTGGGATTGTCGTATCATTTTGAAAGTGAAATAGAAAGAGCGCTACAACACATTTACGATAACACTATTCATCAAAACCACAAAGATGAAGATTTACATGACACTTCTACCCGCTTTAGACTATTGCGCCAACATGGATTTATGGTTTCATCTAATATATTTAAAATATTTAAAGATGAGAAAGGGAATTTTAAGGAGTGCTTGATAACTGACATTCCCGGTTTGTTGAGCTTATATGAGGCCTCACAGTTAAGCTATATTGGAGAGAATATATTAGATGAATCACTTGCTTTCACCACCACTCACCTTCATCAGTTTGTGAAAAATGAAAAAACACATCCATTATCAAATGAAGTATTACTAGCCTTGCAGAGACCTATAAGAAAGAGCCTAGATAGGCTCCACGCTAGGCATTACATTTCATCTTACGAAAACAAGATTTGTCATAACAAAACATTGCTAGAACTTGCAAAGTTGGATTTCAATCTATTACAATGTTTGCATAGAAAAGAGCTTAGTGAAATTTCCAGGTGGTGGAAAGAAATAGACTTTGTACACAAACTACCTTTTGCAAGAGATAGGATTGTGGAGCTATACCTTTGGCTATTAGGAGTTTTTCATGAACCTGAATTTTCACTTGCAAGAAATATTTCAACAAAAGTCATTGCATTGGCCTCAGTTGCAGATGATATTTATGATGCATATGGTACATTTGAAGAGCTTGAGCTCCTTACTGAATCAATTAATAGGTGGGACTTAAATTGTGCGGATCAACTACGTCCAGAATGTTTACAGACATTTTATAAGGTTCTTTTAAATTGTTATGAAGAATTTGAGAGTGAGCTTGGAAAGGAGGAAAGTTACAAAGTTTACTATGCAAGAGAAGCGATGAAAAGATTACTTGGAGCATATTTCAGTGAAGCTCGATGGTTGCACGAAGGATATTTCCCTAGTTTCGATGAGCATTTGAAGGTTTCATTGATTTCTTGTGGATACACCATGATGATAGTGACCTCTTTAATTGGAATGAAAGATTGTGTAACAAAACAAGATTTTGAGTGGCTCTCAAAAGACCCCAAGATAATGAGAGATTGCAATATCCTTTGTAGGTTCATGGATGACATAGTCTCTCATAAGTTTGAGCAACAAAGAGATCATTCACCGTCTACCGTTGAGAGTTACATGAGGCAATATGGGGTGTCAGAGCAAGAGGCATGTGATGAGCTAAGAAAGCAAGTGGTTAATTCATGGAAAGAAATAAACAAAGCATTCCTCAGGCCTTCTAATGTGCCTTATCCAGTTTTATCTCTTGTTCTCAATTTTTCGAGAGTAATGGATCTTCTCTACAAAGATGGTGATGGCTATACGCATGTTGGAAAAGAGACAAAAAATAGTGTTGTTGCGTTACTTATAGATCAAATCCC 1667
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Sbjct:       58 ATGTCATATCAAGTTTTAGCCTCATCACAAAATGACAAAGTATCAAAAATTGTTCGTCCAACAACAACTTATCAACCTTCTATTTGGGGGGAGAGATTTCTCCAATATAGTATTTCAGACCAAGACTTTAGCTATAAAAAGCAGCGAGTTGACGAATTAAAGGAAGTGGTAAGGAGAGAGGTATTTTTAGAATGTTATGATAATGTTTCATATGTGTTGAAGATAGTGGATGATGTTCAACGTTTGGGATTGTCGTATCATTTTGAAAATGAAATAGAAAAAGCGCTACAACACATTTACGATAACACTATTCATCAAAACCACAAAGATGAAGATTTACATGACACTTCTACCCGCTTTAGACTATTGCGCCAACATGGATTTATGGTTTCATCTAATATATTTAAAATATTTAAAGATGAGCAAGGGAATTTTAAGGAGTGCTTGATAACTGACATTCTTGGTTTGCTGAGCTTATATGAGGCCTCACATTTAAGCTATATTGGCGAGAATATATTAAATGAAGCACTTGCTTTCACCACCACTCACCTTCATCAGTTTGTGAAAAATGAAAAAACACATCCATTATCAAATGAAGTATTACTAGCCTTGCAGAGACCTATAAGAAAGAGCCTAGAGAGGCTCCACGCCAGGCATTACATTTCATCTTACGAAAACAAGATTTCTCATAACAAAACATTGCTAGAACTTGCAAAGTTGGATTTCAATCTATTACAATGTTTGCATAGAAAAGAGCTTAGTCAAATTTCCAGGTGGTGGAAAGAAATAGACTTTGTACACAAACTACCTTTTGCAAGAGATAGGATTGTGGAGCTATACCTTTGGCTATTAGGAGTTTTTCATGAACCTGAATTGTCACTGGCAAGAATTATTTCAACAAAAGTTATTGCATTGGCCTCAGTTGCAGATGATATTTATGATGCATATGGTACATTTGAAGAGCTTGAGCTCCTTACTGAATCAATTAATAGGTGGGACTTAAATTGTGCGGATCAACTTCGTCCAGAATGTTTACAGACATTTTATAAGGTTCTTTTAAATTGTTATGAAGAATTTGAGAGTGAGCTTGGAAAGGAGGAAAGTTACAAAGTTTACTACGCAAGAGAAGCGATGAAAAGATTACTTGGAGCATATTTCAGTGAAGCTCGATGGTTGCACGAAGGATATTTCCCTAGCTTCGATGAGCATTTGAAGGTTTCTTTGATTTCTTGTGGATACACCATGATGATAGTGACCTCTTTAATTGGCATGAAAGATTGTGTAACAAAGCAAGATTTTGAGTGGCTCTCAAAAGACCCCAAGATAATGAGAGATTGCAATATCCTTTGTAGGTTCATGGATGACATAGTCTCTCATAAGTTTGAGCAACAAAGAGATCATTCACCGTCTACCGTTGAGAGTTACATGAGGCAATATGGGGTGTCAGAACAAGAGGCATGTGATGAGCTAAGAAAGCAAGTGATTAATTCATGGAAAGAAATAAACAAAGCATTCCTCAGGCCTTCTAATGTGCCTTATCCAGTTTTATCTCTTGTTCTCAATTTTTCGAGAGTAATGGATCTTCTCTACAAAGATGGTGATGGCTATACGCATATTGGAAAAGAGACAAAAAATAGTGTTGTTGCGTTACTTATAGATCAAATCCC 1724


Match Name	Summary
XM_030655054.1	E-Value: 0.000e+0, PID: 98.20 Description: PREDICTED: Cannabis sativa alpha-humulene synthase (LOC115725506), mRNA [more]

Interpro result TPS-TSA-THC Csativa

Performed on: 2021-09-02
Display provided by the neXtProt Feature Viewer


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..26
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..14
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 27..56
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..26
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..43
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 44..56
None	No IPR available	TMHMM	TMhelix		coord: 21..43
None	No IPR available	PANTHER	PTHR31225:SF42		coord: 7..555
None	No IPR available	PANTHER	PTHR31225	FAMILY NOT NAMED	coord: 7..555
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..10
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 22..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..25
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 11..21
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..85
IPR005630	Terpene synthase, metal-binding domain	PFAM	PF03936	Terpene_synth_C	coord: 235..500 e-value: 8.2E-106 score: 353.2
IPR036965	Terpene synthase, N-terminal domain superfamily	GENE3D	1.50.10.130		coord: 66..229 e-value: 1.0E-189 score: 633.1
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10		coord: 28..540 e-value: 1.0E-189 score: 633.1
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 230..554
IPR001906	Terpene synthase, N-terminal domain	PFAM	PF01397	Terpene_synth	coord: 28..204 e-value: 2.3E-52 score: 177.5
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 25..226

TPS9

Reanalysis of 21 trichome RNA-Seq samples, FN-clones109 (TMM50 minvalue)

Reanalysis of 21 trichome RNA-Seq samples, PK-clones109 (TMM50 minvalue)

Interpro result TPS-TSA-THC Csativa

blastn of TPS CDS against cs10 mRNA

blastn of TPS CDS against cs10 genome

blastn of TPS CDS against pkv5 mRNA

blastn of TPS CDS against pkv5 genome

NCBI Download

Sequences

Sequence	ATGTCATATCAAGTTTTAGCCTCATCACAAAATGACAAAGTATCAAAAAT TGTTCGTCCAACAACAACTTATCAACCTTCTATTTGGGGGGAGAGATTTC TCCAATATAGTATTTCAGACCAAGATGTAAGCTATAAAAAGCAGCGAGTT GACGAATTAAAGGAAGTGGTAAGGAGAGAGGTATTTTTAGAATGTTATGA TAATGTTTCATATGTGTTGAAGATAGTGGATGATGTTCAACGTTTGGGAT TGTCGTATCATTTTGAAAGTGAAATAGAAAGAGCGCTACAACACATTTAC GATAACACTATTCATCAAAACCACAAAGATGAAGATTTACATGACACTTC TACCCGCTTTAGACTATTGCGCCAACATGGATTTATGGTTTCATCTAATA TATTTAAAATATTTAAAGATGAGAAAGGGAATTTTAAGGAGTGCTTGATA ACTGACATTCCCGGTTTGTTGAGCTTATATGAGGCCTCACAGTTAAGCTA TATTGGAGAGAATATATTAGATGAATCACTTGCTTTCACCACCACTCACC TTCATCAGTTTGTGAAAAATGAAAAAACACATCCATTATCAAATGAAGTA TTACTAGCCTTGCAGAGACCTATAAGAAAGAGCCTAGATAGGCTCCACGC TAGGCATTACATTTCATCTTACGAAAACAAGATTTGTCATAACAAAACAT TGCTAGAACTTGCAAAGTTGGATTTCAATCTATTACAATGTTTGCATAGA AAAGAGCTTAGTGAAATTTCCAGGTGGTGGAAAGAAATAGACTTTGTACA CAAACTACCTTTTGCAAGAGATAGGATTGTGGAGCTATACCTTTGGCTAT TAGGAGTTTTTCATGAACCTGAATTTTCACTTGCAAGAAATATTTCAACA AAAGTCATTGCATTGGCCTCAGTTGCAGATGATATTTATGATGCATATGG TACATTTGAAGAGCTTGAGCTCCTTACTGAATCAATTAATAGGTGGGACT TAAATTGTGCGGATCAACTACGTCCAGAATGTTTACAGACATTTTATAAG GTTCTTTTAAATTGTTATGAAGAATTTGAGAGTGAGCTTGGAAAGGAGGA AAGTTACAAAGTTTACTATGCAAGAGAAGCGATGAAAAGATTACTTGGAG CATATTTCAGTGAAGCTCGATGGTTGCACGAAGGATATTTCCCTAGTTTC GATGAGCATTTGAAGGTTTCATTGATTTCTTGTGGATACACCATGATGAT AGTGACCTCTTTAATTGGAATGAAAGATTGTGTAACAAAACAAGATTTTG AGTGGCTCTCAAAAGACCCCAAGATAATGAGAGATTGCAATATCCTTTGT AGGTTCATGGATGACATAGTCTCTCATAAGTTTGAGCAACAAAGAGATCA TTCACCGTCTACCGTTGAGAGTTACATGAGGCAATATGGGGTGTCAGAGC AAGAGGCATGTGATGAGCTAAGAAAGCAAGTGGTTAATTCATGGAAAGAA ATAAACAAAGCATTCCTCAGGCCTTCTAATGTGCCTTATCCAGTTTTATC TCTTGTTCTCAATTTTTCGAGAGTAATGGATCTTCTCTACAAAGATGGTG ATGGCTATACGCATGTTGGAAAAGAGACAAAAAATAGTGTTGTTGCGTTA CTTATAGATCAAATCCCA
Sequence Length	1668
Sequence Checksum	9cece02af3ea965482739d3b0453e708

Sequence

ATGTCATATCAAGTTTTAGCCTCATCACAAAATGACAAAGTATCAAAAAT
TGTTCGTCCAACAACAACTTATCAACCTTCTATTTGGGGGGAGAGATTTC
TCCAATATAGTATTTCAGACCAAGATGTAAGCTATAAAAAGCAGCGAGTT
GACGAATTAAAGGAAGTGGTAAGGAGAGAGGTATTTTTAGAATGTTATGA
TAATGTTTCATATGTGTTGAAGATAGTGGATGATGTTCAACGTTTGGGAT
TGTCGTATCATTTTGAAAGTGAAATAGAAAGAGCGCTACAACACATTTAC
GATAACACTATTCATCAAAACCACAAAGATGAAGATTTACATGACACTTC
TACCCGCTTTAGACTATTGCGCCAACATGGATTTATGGTTTCATCTAATA
TATTTAAAATATTTAAAGATGAGAAAGGGAATTTTAAGGAGTGCTTGATA
ACTGACATTCCCGGTTTGTTGAGCTTATATGAGGCCTCACAGTTAAGCTA
TATTGGAGAGAATATATTAGATGAATCACTTGCTTTCACCACCACTCACC
TTCATCAGTTTGTGAAAAATGAAAAAACACATCCATTATCAAATGAAGTA
TTACTAGCCTTGCAGAGACCTATAAGAAAGAGCCTAGATAGGCTCCACGC
TAGGCATTACATTTCATCTTACGAAAACAAGATTTGTCATAACAAAACAT
TGCTAGAACTTGCAAAGTTGGATTTCAATCTATTACAATGTTTGCATAGA
AAAGAGCTTAGTGAAATTTCCAGGTGGTGGAAAGAAATAGACTTTGTACA
CAAACTACCTTTTGCAAGAGATAGGATTGTGGAGCTATACCTTTGGCTAT
TAGGAGTTTTTCATGAACCTGAATTTTCACTTGCAAGAAATATTTCAACA
AAAGTCATTGCATTGGCCTCAGTTGCAGATGATATTTATGATGCATATGG
TACATTTGAAGAGCTTGAGCTCCTTACTGAATCAATTAATAGGTGGGACT
TAAATTGTGCGGATCAACTACGTCCAGAATGTTTACAGACATTTTATAAG
GTTCTTTTAAATTGTTATGAAGAATTTGAGAGTGAGCTTGGAAAGGAGGA
AAGTTACAAAGTTTACTATGCAAGAGAAGCGATGAAAAGATTACTTGGAG
CATATTTCAGTGAAGCTCGATGGTTGCACGAAGGATATTTCCCTAGTTTC
GATGAGCATTTGAAGGTTTCATTGATTTCTTGTGGATACACCATGATGAT
AGTGACCTCTTTAATTGGAATGAAAGATTGTGTAACAAAACAAGATTTTG
AGTGGCTCTCAAAAGACCCCAAGATAATGAGAGATTGCAATATCCTTTGT
AGGTTCATGGATGACATAGTCTCTCATAAGTTTGAGCAACAAAGAGATCA
TTCACCGTCTACCGTTGAGAGTTACATGAGGCAATATGGGGTGTCAGAGC
AAGAGGCATGTGATGAGCTAAGAAAGCAAGTGGTTAATTCATGGAAAGAA
ATAAACAAAGCATTCCTCAGGCCTTCTAATGTGCCTTATCCAGTTTTATC
TCTTGTTCTCAATTTTTCGAGAGTAATGGATCTTCTCTACAAAGATGGTG
ATGGCTATACGCATGTTGGAAAAGAGACAAAAAATAGTGTTGTTGCGTTA
CTTATAGATCAAATCCCA

Sequence Length

1668

Sequence Checksum

9cece02af3ea965482739d3b0453e708

Summary

Resource Type	mRNA
Organism	Cannabis sativa L.
Name	TPS9
Identifier	TPS9
Time Accessioned	Monday, December 30, 2024 - 15:09
Time Last Modified	Monday, December 30, 2024 - 15:09