TPS40 | ICGRC

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Sequences

Summary

Annotations

This record has the following annotations.
Term	Name	Definition
GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai]
GO:0016829	lyase activity
GO:0010333	terpene synthase activity	Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. [EC:4.2.3.-, GOC:tair_curators]
INTERPRO:IPR008930	Terpenoid_cyclase/PrenylTrfase
INTERPRO:IPR036965	Terpene_synth_N_sf
INTERPRO:IPR001906	Terpene_synth_N
INTERPRO:IPR008949	Isoprenoid_synthase_dom_sf
INTERPRO:IPR005630	Terpene_synthase_metal-bd

Click a tab below to view blast alignments.

blastn of TPS CDS against pkv5 genome

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 genome
Display provided by the neXtProt Feature Viewer

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BLAST of TPS40 vs. Genbank
Match Name: CM010790.2
Description: Cannabis sativa cultivar Purple Kush chromosome 1, whole genome shotgun sequence

HSP 1 Score: 368.604 bits (199), Expect = 1.667e-99
Identity = 260/288 (90.28%), Postives = 260/288 (90.28%), Query Frame = 1

Query:      161 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAA------TATTACTAACCATAATT---ATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAG 439
                |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||| || ||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||      ||||||||||| |||||   ||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct:  3066040 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGGTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAG 3066327

HSP 2 Score: 259.651 bits (140), Expect = 1.047e-66
Identity = 324/412 (78.64%), Postives = 324/412 (78.64%), Query Frame = 1

Query:      438 AGAAATTTTTAAT-ATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAAC-CAAGTGTCTCGAAAATTACATGATGAT-A-A-CGGAGGAAAACAAATTAGATGA-TGATGATGATCGTAATAAT-ATTATTGTA-GTAATTAG--A--CATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACAT 837
                ||| ||||||||| ||||| || |||| ||  |||||| | ||| | | ||| | |   ||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| || || || |||| |||  |||||||||| ||| | |||  | || ||||| || || | | |  | ||||  || ||| |||| |||| |||||  | || || |||||  ||   || |||  |  || || || ||||| |||||||||||||||||| ||||||| || || |||||||| ||||| |  || ||||||| |||||| |||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||  ||||| |||||||||||||||
Sbjct:  2519050 AGAGATTTTTAATCATTTT-AAGGACGAGATAGGAAAAATCAAAACGAACATGATTAGTGATGATATTATGGAAGTATTGGCCTTATATGAAGCTTCATTCTATGAGAAAAAAGGCGAAAGTATTTTAGAAGAAGTTAGAATTTTCACAACTCAA-TATCTAAAGAACTACATTATAATGATATCACAAGAAAGAAAGTTA-ATGATTGATAATGATAATGATTATGATTATGATATCGAAATAGTGAATCACGCTTTGGAGCTCCCACTTCATTGGAGGACTACAAGAACAGAAGCTAAGTGGTTCATCGACGCGTATGAGAAAAAACAAGACATGAATCCTATTTTGCTTGAGTTTGCTAAACTCGATTTCAACATGATACAATCAACACATCATGACGATCTAAAACAT 2519458

HSP 3 Score: 183.939 bits (99), Expect = 6.482e-44
Identity = 123/135 (91.11%), Postives = 123/135 (91.11%), Query Frame = 1

Query:     1203 GTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT 1337
                |||||| |||||||||| |  |||  | |||||||||||||||||||||| |||||||||||||||| |  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2530193 GTGGGTCGATATGTGTAAAAGTTTCTTGCAAGAGGCAAAATGGTACTATAGTGGATACACACCAACAATGGAAGAATATATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT 2530327

HSP 4 Score: 126.692 bits (68), Expect = 1.108e-26
Identity = 120/145 (82.76%), Postives = 120/145 (82.76%), Query Frame = 1

Query:     1063 AGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGAAAAACACTT-TG--TCAACATTGAATGCCTCAAGAAAACGT 1204
                ||||||||| |  || |  |||| || |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| ||| || ||||||| |||  ||||| | |   |||||||| ||| ||| ||||||||||
Sbjct:  2520436 AGATGGGATATGGAAATGATAAATGAGTTACCAGAATATATGAAGATGCCTTATATTGTTTTACACAATACCATTAATGAAATGGTATTTGAGGTATTAAGAGACCAACACATCTCCATCAACATTCAATACCTTAAGAAAACGT 2520580

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BLAST of TPS40 vs. Genbank
Match Name: AGQN03003403.1
Description: Cannabis sativa cultivar Purple Kush 003407F, whole genome shotgun sequence

HSP 1 Score: 248.571 bits (134), Expect = 2.266e-63
Identity = 322/412 (78.16%), Postives = 322/412 (78.16%), Query Frame = 1

Query:      438 AGAAATTTTTAAT-ATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAAC-CAAGTGTCTCGAAAATTACATGATGAT-A-A-CGGAGGAAAACAAATTAGATGA-TGATGATGATCGTAATAAT-ATTATTGTA-GTAATTAG--A--CATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACAT 837
                ||| ||||||||| ||||| || |||| ||  |||||| | ||| | | ||| | |   ||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| || || || |||| |||  |||||||||| ||| | |||  | || ||||| || || | | |  | ||||  || ||| |||| |||| |||||  | || || |||||  ||   || |||  |  || || || ||||| ||||||||| |||||||| ||||||| || || |||||||| ||||| |  || ||||||| |||||| |||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||  ||||| || ||||||||||||
Sbjct:    17986 AGAGATTTTTAATCATTTT-AAGGACGAGATAGGAAAAATCAAAACGAACATGATTAGTGATGATATTATGGAAGTATTGGCCTTATATGAAGCTTCATTCTATGAGAAAAAAGGCGAAAGTATTTTAGAAGAAGTTAGAATTTTCACAACTCAA-TATCTAAAGAACTACATTATAATGATATCACAAGAAAGAAAGTTA-ATGATTGATAATGATAATGATTATGATTATGATATCGAAATAGTGAATCACGCTTTGGAGCTCCCACTTCATCGGAGGACTACAAGAACAGAAGCTAAGTGGTTCATCGACGCGTATGAGAAAAAACAAGACATGAATCCTATTTTGCTTGAGTTTGCTAAACTCGATTTCAACATGATACAATCAACACATCATGATGATCTAAAACAT 18394

HSP 2 Score: 189.479 bits (102), Expect = 1.393e-45
Identity = 124/135 (91.85%), Postives = 124/135 (91.85%), Query Frame = 1

Query:     1203 GTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT 1337
                |||||| |||||||||| |  |||  | |||||||||||||||||||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    36053 GTGGGTCGATATGTGTAAAAGTTTCTTGCAAGAGGCAAAATGGTACTATAGTGGATACACACCAACATTGGAAGAATATATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT 36187

HSP 3 Score: 124.846 bits (67), Expect = 3.985e-26
Identity = 119/144 (82.64%), Postives = 119/144 (82.64%), Query Frame = 1

Query:     1063 AGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGAAAAACACTT-TG--TCAACATTGAATGCCTCAAGAAAACG 1203
                ||||||||| |  || |  |||| || |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| ||| || ||||||| |||  ||||| | |   |||||||| ||| ||| |||||||||
Sbjct:    19312 AGATGGGATATGGAAATGATAAATGAGTTACCAGAATATATGAAGATGCCTTATATTGTTTTACACAATACCATTAATGAAATGGTATTTGAGGTATTAAGAGACCAACACATCTCCATCAACATTCAATACCTTAAGAAAACG 19455

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BLAST of TPS40 vs. Genbank
Match Name: AGQN03000042.1
Description: Cannabis sativa cultivar Purple Kush 000041F, whole genome shotgun sequence

HSP 1 Score: 73.1396 bits (39), Expect = 1.464e-10
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1

Query:       11 AATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATA 52
                ||||||||||||||||||||||||||||| ||||||||||||
Sbjct:   178233 AATCAAGTACTTGCTACCCCATCCAATGTGCTGTGGTCAATA 178192


Match Name	Summary
CM010790.2	E-Value: 1.667e-99, PID: 90.28 Description: Cannabis sativa cultivar Purple Kush chromosome 1, whole genome shotgun sequence [more]
AGQN03003403.1	E-Value: 2.266e-63, PID: 78.16 Description: Cannabis sativa cultivar Purple Kush 003407F, whole genome shotgun sequence [more]
AGQN03000042.1	E-Value: 1.464e-10, PID: 97.62 Description: Cannabis sativa cultivar Purple Kush 000041F, whole genome shotgun sequence [more]

blastn of TPS CDS against pkv5 mRNA

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 mRNA
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BLAST of TPS40 vs. Genbank
Match Name: PKGMv1-70835_t
Description: No definition line

HSP 1 Score: 139.619 bits (75), Expect = 1.877e-31
Identity = 196/253 (77.47%), Postives = 196/253 (77.47%), Query Frame = 1

Query:      496 GATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAAC-CAAGTGTCTCGAAAATTACATGATGAT-A-A-CGGAGGAAAACAAATTAGATGA-TGATGATGATCGTAATAAT-ATTATTGTA-GTAATTAG--A--CATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGA 737
                ||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| || || || |||| |||  |||||||||| ||| | |||  | || ||||| || || | | |  | ||||  || ||| |||| |||| |||||  | || || |||||  ||   || |||  |  || || || ||||| |||||||||||||||||| ||||||| || || |||||||| |||||
Sbjct:       10 GATGATATTATGGAAGTATTGGCCTTATATGAAGCTTCATTCTATGAGAAAAAAGGCGAAAGTATTTTAGAAGAAGTTAGAATTTTCACAACTCAA-TATCTAAAGAACTACATTATAATGATATCACAAGAAAGAAAGTTA-ATGATTGATAATGATAATGATTATGATTATGATATCGAAATAGTGAATCACGCTTTGGAGCTCCCACTTCATTGGAGGACTACAAGAACAGAAGCTAAGTGGTTCATCGA 260


Match Name	Summary
PKGMv1-70835_t	E-Value: 1.877e-31, PID: 77.47 Description: No definition line [more]

blastn of TPS CDS against cs10 genome

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 genome
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BLAST of TPS40 vs. Genbank
Match Name: NC_044374.1
Description: Cannabis sativa chromosome 5, cs10, whole genome shotgun sequence

HSP 1 Score: 374.144 bits (202), Expect = 3.521e-101
Identity = 261/288 (90.62%), Postives = 261/288 (90.62%), Query Frame = 1

Query:      161 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAATATTA------CTAACCATAATTATAAT---TTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAG 439
                |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| || ||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||      |||||| ||||||||||   |||||  ||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct:  2523118 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGCTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAG 2522831

HSP 2 Score: 368.604 bits (199), Expect = 1.638e-99
Identity = 260/288 (90.28%), Postives = 260/288 (90.28%), Query Frame = 1

Query:      161 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAATATTA------CTAACCATAATTATAAT---TTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAG 439
                |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||| || ||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||      |||||| ||||||||||   |||||  ||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct:  2484488 AGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGGTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAG 2484201

HSP 3 Score: 254.111 bits (137), Expect = 4.786e-65
Identity = 323/412 (78.40%), Postives = 323/412 (78.40%), Query Frame = 1

Query:      438 AGAAATTTTTAAT-ATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAAC-CAAGTGTCTCGAAAATTACATGATGAT-A-A-CGGAGGAAAACAAATTAGATGA-TGATGATGATCGTAATAAT-ATTATTGTA-GTAATTAG--A--CATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACAT 837
                ||| ||||||||| ||||| || |||| ||  |||||| | ||| | | ||| | |   ||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| || || || |||| |||  |||||||||| ||| | |||  | || ||||| || || | | |  | ||||  || ||| |||| |||| |||||  | || || |||||  ||   || |||  |  || || || ||||| ||||||||| |||||||| ||||||| || || |||||||| ||||| |  || ||||||| |||||| |||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||  ||||| |||||||||||||||
Sbjct:  2020238 AGAGATTTTTAATCATTTT-AAGGACGAGATAGGAAAAATCAAAACGAACATGATTAGTGATGATATTATGGAAGTATTGGCCTTATATGAAGCTTCATTCTATGAGAAAAAAGGCGAAAGTATTTTAGAAGAAGTTAGAATTTTCACAACTCAA-TATCTAAAGAACTACATTATAATGATATCACAAGAAAGAAAGTTA-ATGATTGATAATGATAATGATTATGATTATGATATCGAAATAGTGAATCACGCTTTGGAGCTCCCACTTCATCGGAGGACTACAAGAACAGAAGCTAAGTGGTTCATCGACGCGTATGAGAAAAAACAAGACATGAATCCTATTTTGCTTGAGTTTGCTAAACTCGATTTCAACATGATACAATCAACACATCATGACGATCTAAAACAT 2020646

HSP 4 Score: 189.479 bits (102), Expect = 1.369e-45
Identity = 124/135 (91.85%), Postives = 124/135 (91.85%), Query Frame = 1

Query:     1203 GTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT 1337
                |||||| |||||||||| |  |||  | |||||||||||||||||||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2036267 GTGGGTCGATATGTGTAAAAGTTTCTTGCAAGAGGCAAAATGGTACTATAGTGGATACACACCAACATTGGAAGAATATATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT 2036401

HSP 5 Score: 124.846 bits (67), Expect = 3.915e-26
Identity = 119/144 (82.64%), Postives = 119/144 (82.64%), Query Frame = 1

Query:     1063 AGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGAAAAACACTT-TG--TCAACATTGAATGCCTCAAGAAAACG 1203
                ||||||||| |  || |  |||| || |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| ||| || ||||||| |||  ||||| | |   |||||||| ||| ||| |||||||||
Sbjct:  2021626 AGATGGGATATGGAAATGATAAATGAGTTACCAGAATATATGAAGATGCCTTATATTGTTTTACACAATACCATTAATGAAATGGTATTTGAGGTATTAAGAGACCAACACATCTCCATCAACATTCAATACCTTAAGAAAACG 2021769

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BLAST of TPS40 vs. Genbank
Match Name: NC_044373.1
Description: Cannabis sativa chromosome 4, cs10, whole genome shotgun sequence

HSP 1 Score: 71.293 bits (38), Expect = 5.173e-10
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1

Query:       12 ATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATA 52
                |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 70056719 ATCAAGTACTTGCTACCCCATCCAATGTGCTGTGGTCAATA 70056679


Match Name	Summary
NC_044374.1	E-Value: 3.521e-101, PID: 90.63 Description: Cannabis sativa chromosome 5, cs10, whole genome shotgun sequence [more]
NC_044373.1	E-Value: 5.173e-10, PID: 97.56 Description: Cannabis sativa chromosome 4, cs10, whole genome shotgun sequence [more]

blastn of TPS CDS against cs10 mRNA

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 mRNA
Display provided by the neXtProt Feature Viewer

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BLAST of TPS40 vs. Genbank
Match Name: XM_030645191.1
Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716405), mRNA

HSP 1 Score: 1166.36 bits (631), Expect = 0.000e+0
Identity = 1390/1752 (79.34%), Postives = 1390/1752 (79.34%), Query Frame = 1

Query:       12 ATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATAATAGTAGCCCTAGCTCTAC---TACTAAATTTTCTATTGTTCGAAGATCGGCAAATTATGAACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAA------TATTACTAACCATAATT---ATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAGAAATTTTTAATATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATG--A-GAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAAAATTACATG-A-----TG-ATAACG-G-A-G-GAAAACAA-ATTAG-ATGATGATGATGATCGTAATAATATTA-TT-G-TAGTAATTAGACATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATG---TATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACATTTGTCTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTTTAGGAGAATATCTGCAAGAATATATGTTCTTATTACAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGAAAAACACTTTGTCAACATTGAATGCCTCAAGAAAACGTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTTCTCTTTTGCAAATCCCATAACTAAAGAGGTTTTGGAAATCTTCCAA---CAAGGT--T-ATCCCACAATAATTCGTCAATC-TGCCATGATCGTACGTTTGGCAAATGATCTAGCAACATCATCTGAGGAATTCGAA-AGAGGTGACTCGCCTAAATCAATTCAATGTTACATGCAAGACCATAATG-TATCTAAAGAGGAAGCTCATGAATACATTAAGTTTTCAATAAGAGAAACATGGAAGGAGATGAAT-AGTACTTTTAATATTGA-AGATGGAAATTCATCA--TTG-GTTGATGATGCCAAAAACTTTGCAAGAATGGGATTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGATAATTTAGCAAAAGAGCGTATTTC 1715
                ||||||||||||||||||||| |||||||||||||||    |||  | |||||| |||||   |||| ||  |  || || ||||||||| || || |||| |||||||||||||||||| ||||  |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| || ||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||      ||||||||||| |||||   ||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||| ||   ||| || ||||||||| ||  | | | |   ||||||||||||||| |||||   ||||||||||||||||||||||  | |||| |||   |||  || ||||||||||| ||  ||||  |||| || |||||  |||| |||||| |     || | || | | | | ||||| || ||||  || | |||||| ||  || ||||| || || | || ||||||  || || || |||||||| ||||||||||| |   ||||| |||| || | |||||| || || |   |||| ||||||| |||||| |||||||| |||||| | |||||||| ||| ||||||| || || || |||||||  || ||||| ||| || ||||||| || |||||||||||  ||  |||||| || |  ||| |||||||||  |||||||| |||||||    ||| |||||| |||||||| ||| ||| |||  ||| |||||||| ||||| ||||||  ||||||| ||| ||| ||||| |||||||| |||||||| |||||||| || ||||| || || |||||||||||||||||| ||| |||||| ||||||||||| ||| || | || || ||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| ||||  || |||||||||  | || || |||||||||||||||||| ||| |||||| ||||||| ||| | |||| || || | ||||||| ||||||||||| |||| |||||||  |||||||||  ||||||||| |||    |||||| ||||| |||||||| |||| |||||| ||||||||||||| | |||  ||||||| ||||| ||| | |  ||| ||| ||| |||   |||  |  | ||||||  ||||||   ||| | |||  ||||   | |  | ||| ||||| ||| |||||| || || ||||| ||| ||||| |||   |||||||| ||||||||||||||| | ||  |||||| || |  |||| ||||||| |||| |||| ||||| |  ||||| |||||||||||||| |||||| || |   | || || || || ||   || ||  |  ||  ||||| | |  ||||||  | || ||||  | | |||| || ||| |  |||||||||||||| |||||||  ||| |||| ||||||| ||||||||
Sbjct:      208 ATCAAGTACTTGCTACCCCATACAATGTACTGTGGTC---GATA--A-CCCTAGTTCTACGATTACT-AA--TAATAGTGATCGAAGATCAGCCAACTATGGACCTCCGATTTGGTCTTTTGATTTTATTCAATCTCTTCCAATCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGCTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAGAAATTTTTAATGCTTTCAAGGATAAGAGAGGGAAATTTAAAACATGCTTGAGT---GATGATATTATGGGAGTATTGTGTTTATATGAAGCTTCATTCTATGCTATGAAACATGA--AAAT-ATTTTGGAGGAAGCAAGAATTTTTTCAACTAAATGTCTTAAAAAATACATGGAGAAAATGGAGAATGAGGAAGAGAAAAAAATATTATTATTA-GATGATAATAATATTAATAGTAATTTGCTATTAATTAATCACGCTTTCGAGCTTCCGCTTCATTGGAGAATAACAAGATCGGAAGCTAGGTGGTTCATTGACGAAATATATGAGAAAAAACAAGACATGAATTCGACTTTGTTCGAGTTTGCGAAATTAGATTTTAATATAGTGCAATCAACACACCAAGAAGATTTACAACATTTATCGAGGTGGTGGAGGGATTGTAAACTTGGTGGGAAATTGAATTTTGCTAGAGATAGATTGATGGAAGCTTTCTTATGGGATGTTGGACTAAAATTCGAGGGAGAATTCAGCTATTTTAGAAGAATAAATGCAAGATTATTTGTGCTTATAACAATAATTGATGATATTTATGATGTATATGGAACTTTGGAGGAATTAGAGCTTTTCACTAGTGCTGTTGAAAGATGGGATGTGAAATTAATCAATGAGTTACCAGATTACATGAAGATGCCTTTCTTTGTTTTACACAATACCATAAATGAGATGGGGTTCGATGTATTAGTACAACAAAACTTTGTCAACATTGAATACCTTAAGAAATCGTGGGTAGATTTATGTAAATGTTATTTACAAGAAGCAAAATGGTATTATAGTGGATACCAACCAACATTGGAAGAATACACTGAGTTGGGTTGGCTTTCAATAGGAGCATCAGTAATTCTTATGCATGCTTATTTTTGTTTCACAAATCCTATAACAAAACAAGACTTGAAAAGCTTGCAATTACAACATCATTATCCCAACATAATTAAACAAGCATGCT-TGATTACAAGGCTTGCAGATGATTTAGGAACATCTTCGGATGAATT-GAATAGAGGCGACGTTCCTAAATCGATTCAATGTTACATGTACGATAATAATGCTACCG-AAGACGAAGCTCGTGAACACATCAAGTTCTTGATAAGTGAAACATGGAAGGATATGAATAAGAAAGATGAAGAT-GAGAGTTGTTTAT-CAGAAAATTTTGTTGAAGTTTGCAAAAATATGGCTAGAACAGCACTATTCATATATGAGAATGGAGATGGACATGGTTCTCAGAATAGTTTATCAAAAGAACGTATTTC 1938

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BLAST of TPS40 vs. Genbank
Match Name: XM_030644766.1
Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716063), transcript variant X1, mRNA

HSP 1 Score: 1155.28 bits (625), Expect = 0.000e+0
Identity = 1388/1752 (79.22%), Postives = 1388/1752 (79.22%), Query Frame = 1

Query:       12 ATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATAATAGTAGCCCTAGCTCTAC---TACTAAATTTTCTATTGTTCGAAGATCGGCAAATTATGAACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAA------TATTACTAACCATAATT---ATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAGAAATTTTTAATATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATG--A-GAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAAAATTACATG-A-----TG-ATAACG-G-A-G-GAAAACAA-ATTAG-ATGATGATGATGATCGTAATAATATTA-TT-G-TAGTAATTAGACATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATG---TATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACATTTGTCTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTTTAGGAGAATATCTGCAAGAATATATGTTCTTATTACAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGAAAAACACTTTGTCAACATTGAATGCCTCAAGAAAACGTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTTCTCTTTTGCAAATCCCATAACTAAAGAGGTTTTGGAAA-T---C--TTCCAACAAGGTTATCCCACAATAATTCGTCAATC-TGCCATGATCGTACGTTTGGCAAATGATCTAGCAACATCATCTGAGGAATTCGAA-AGAGGTGACTCGCCTAAATCAATTCAATGTTACATGCAAGACCATAATG-TATCTAAAGAGGAAGCTCATGAATACATTAAGTTTTCAATAAGAGAAACATGGAAGGAGATGAAT-AGTACTTTTAATATTGA-AGATGGAAATTCATCA--TTG-GTTGATGATGCCAAAAACTTTGCAAGAATGGGATTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGATAATTTAGCAAAAGAGCGTATTTC 1715
                ||||||||||||||||||||| |||||||||||||||    |||  | |||||| |||||   |||| ||  |  || || ||||||||| || || |||| |||||| ||||||||||| ||||  |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||| || ||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||      ||||||||||| |||||   ||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||| ||   ||| || ||||||||| ||  | | | |   ||||||||||||||| |||||   ||||||||||||||||||||||  | |||| |||   |||  || ||||||||||| ||  ||||  |||| || |||||  |||| |||||| |     || | || | | | | ||||| || ||||  || | |||||| ||  || ||||| || || | || ||||||  || || || |||||||| ||||||||||| |   ||||| |||| || | |||||| || || |   |||| ||||||| |||||| |||||||| |||||| | |||||||| ||| ||||||| || || || |||||||  || ||||| ||| || ||||||| || |||||||||||  ||  |||||| || |  ||| |||||||||  |||||||| |||||||    ||| |||||| |||||||| ||| ||| |||  ||| |||||||| ||||| ||||||  ||||||| ||| ||| ||||| |||||||| |||||||| |||||||| || ||||| || || |||||||||||||||||| ||| |||||| ||||||||||| ||| || | || || ||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| ||||  || |||||||||  | || || |||||||||||||||||| ||| |||||| ||||||| ||| | |||| || || | ||||||| ||||||||||| |||| |||||||  |||||||||  ||||||||| |||    |||||| ||||| |||||||| |||| |||||| ||||||||||||| | |||  ||||||| ||||| ||| | |  ||| ||| |   |  || |||||   ||||||||  ||||||   ||| | |||  ||||   | |  | ||| ||||| ||| |||||| || || ||||| ||| ||||| |||   |||||||| ||||||||||||||| | ||  |||||| || |  |||| ||||||| |||| |||| ||||| |  ||||| |||||||||||||| |||||| || |   | || || || || ||   || ||  |  ||  ||||| | |  ||||||  | || ||||  | | |||| || ||| |  |||||||||||||| |||||||  ||| |||| ||||||| ||||||||
Sbjct:      198 ATCAAGTACTTGCTACCCCATACAATGTACTGTGGTC---GATA--A-CCCTAGTTCTACGATTACT-AA--TAATAGTGATCGAAGATCAGCCAACTATGGACCTCCCATTTGGTCTTTTGATTTTATTCAATCTCTTCCAATCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGGTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAGAAATTTTTAATGCTTTCAAGGATAAGAGAGGGAAATTTAAAACATGCTTGAGT---GATGATATTATGGGAGTATTGTGTTTATATGAAGCTTCATTCTATGCTATGAAACATGA--AAAT-ATTTTGGAGGAAGCAAGAATTTTTTCAACTAAATGTCTTAAAAAATACATGGAGAAAATGGAGAATGAGGAAGAGAAAAAAATATTATTATTA-GATGATAATAATATTAATAGTAATTTGCTATTAATTAATCACGCTTTCGAGCTTCCGCTTCATTGGAGAATAACAAGATCGGAAGCTAGGTGGTTCATTGACGAAATATATGAGAAAAAACAAGACATGAATTCGACTTTGTTCGAGTTTGCGAAATTAGATTTTAATATAGTGCAATCAACACACCAAGAAGATTTACAACATTTATCGAGGTGGTGGAGGGATTGTAAACTTGGTGGGAAATTGAATTTTGCTAGAGATAGATTGATGGAAGCTTTCTTATGGGATGTTGGACTAAAATTCGAGGGAGAATTCAGCTATTTTAGAAGAATAAATGCAAGATTATTTGTGCTTATAACAATAATTGATGATATTTATGATGTATATGGAACTTTGGAGGAATTAGAGCTTTTCACTAGTGCTGTTGAAAGATGGGATGTGAAATTAATCAATGAGTTACCAGATTACATGAAGATGCCTTTCTTTGTTTTACACAATACCATAAATGAGATGGGGTTCGATGTATTAGTACAACAAAACTTTGTCAACATTGAATACCTTAAGAAATCGTGGGTAGATTTATGTAAATGTTATTTACAAGAAGCAAAATGGTATTATAGTGGATACCAACCAACATTGGAAGAATACACTGAGTTGGGTTGGCTTTCAATAGGAGCATCAGTAATTCTTATGCATGCTTATTTTTGTTTCACAAATCCTATAACAAAACAAGACTTGAAAAGTTTGCAATTGCAACATCATTATCCCAACATAATTAAACAAGCATGCT-TGATTACAAGGCTTGCAGATGATTTAGGAACATCTTCGGATGAATT-GAATAGAGGCGACGTTCCTAAATCGATTCAATGTTACATGTACGATAATAATGCTACCG-AAGACGAAGCTCGTGAACACATCAAGTTCTTGATAAGTGAAACATGGAAGGATATGAATAAGAAAGATGAAGAT-GAGAGTTGTTTAT-CAGAAAATTTTGTTGAAGTTTGCAAAAATATGGCTAGAACAGCACTATTCATATATGAGAATGGAGATGGACATGGTTCTCAGAATAGTTTATCAAAAGAACGTATTTC 1928

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BLAST of TPS40 vs. Genbank
Match Name: XM_030645439.1
Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716605), mRNA

HSP 1 Score: 1090.64 bits (590), Expect = 0.000e+0
Identity = 1304/1644 (79.32%), Postives = 1304/1644 (79.32%), Query Frame = 1

Query:       84 TATTGTTCGAAGATCGGCAAATTATGA-ACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGC-AATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGA-ATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAATATTACTAACCATAATTATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAGAAATTTTTAATATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAA-TCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAAAA-T-TAC-ATGATGATAACGGAGGAAAACAAATTAGATGA-TGATGATGATCGTAATAATATTATTGTAGTAATTAGACATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACAT-TTGTCTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTTTAGGAGAATATCTGCAAGAATATATGTTCTTATTACAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGA--AAAACACTTT-GTCAACATTGAATGCCTCAAGAAAACGTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTTCTCTTTT-GCAAATC-----C---CA-T-A-----ACTAAAGAGGTTTTGGAAATCTTCCAACAAGGTTATC--CCA-CAATAATTCGTCAATCTGCCATGATCGTACGTTTGGCAAATGATCTAGCAACATCATCTGAGGAATTCGAAAGAGGTGACTCGCCTAAATCAATTCAATGTTACATGCAAGACCATAATGTATCTAAAGAGGAAGCTCATGAATACATTAAGTTTTCAATAAGAGAAACATGGAAGGAGATGAATAGTACTTTTAATATTGAAGATGGAAATTCATCATTGGTTGATGATGCCAAAAACTTTGC-AAGAATGGGATTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGATAAT 1695
                ||||| |||| |||| || || | |||  ||||| ||||||||||| ||||| |||||||||||| |||  ||||||||||||||| | |||||||| | | | ||| || ||  ||| ||| ||||||| |||| |  || || ||||||   ||||||||||| | ||| ||  | || |||||||||||||| |||||||||||||| | |||| |||||||||||||  |||||||||| ||||||||      |  ||| | |   | |||||  | |  || |||||||||||||||  ||||||||||  |||||||||||||||| ||||||||||||||||| |||||||| |||||||||   || || |||| || | |||||  | ||  ||  ||||||||   ||||||| |||||| |||| || ||||| |||||||| || ||||||||||| || ||||| || ||  ||||||||||  |||||||||| || |||||| |||| |  || || |||||| | ||| |||| || ||| |||| |||| |||||  | || ||  ||| | |||| | |  ||||| |||||||| ||||||||| |||||||  ||||||| || || |||||||| || || | ||| | ||||| |||||| |||||| |||  ||||||||||| || ||||| ||||||||||| ||||||||||  ||||| || |||||||||||| |  || ||||||||||| ||||||||||| ||||| ||| |||||||||  |||||| | |||||||  ||||| ||||||||| ||||| ||||||||||| || | |||||||| ||||| | || | |||| | | ||| ||  ||  | ||| | || |||||||||||||||||||| |||||||| || |||||||||||||||||    | |||||||||||||||||| ||| |  |||| || |||||||| || ||||||||||||| ||||||||||||||||||||| ||||| |||| ||| || || |||| |||  || | | ||   |||||||| ||| ||| |||||||||||||| |||||||||| |  |||  | |||||||||||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||   ||||||      |   || | |     ||||||||| |||| |||  |||  || | ||||||   ||  | || ||||||||   |||||| ||  |||| ||  ||||||| |||||||||||||| ||||||||  ||||||||||  | || | ||||||||||||||||||||||||  | ||||||||| |||||||||||| |||| |  ||||||||| |||||  ||| |||||||||||||||||| |  | ||   ||| |  ||  || | | ||||||  ||| ||||| | ||||||||| |||| ||||||| || || ||||||||||| ||||| ||||||||||||||||||
Sbjct:      239 TATTGATCGACGATCTGCCAACTTTGAGCCCTCC-ATTTGGTCTTTTGATTATATTCAATCTCTTACAAGTCAATATAAGGGAGAACCTTATACAAGTCGAGTGAAAAAACTT-GAGAGAGATGTGAAAAAGATGTTAGTT-GAGATGGAA---AACTCTTTAGCTCAACTTGAACTCATTGATACATTGCAAAGACTTGGAATATCTTACCGTTTTGAGAATGAAATAAATTCTATTTTGAACAAAAAATA------T-GTTA-A-T---ATTAATA--A-T--CC-TAATTATAATTTATATGCCATTGCTCTTCAATTTAGGCTTCTACGTCAACATGGCTATGCAGTACCTCAAGAGATTTTTAATCAGTTGAAGGACGAGA-TAGAAAACATCAAAAAACACATAAATGGTAATGATATCATGGGAGTATTAGCCTTATACGAAGCTTCTTTTTATGAGAAAAAAGGCGAAAGTATTTTAAAGGAAGCTAGAATTTTCACAACTAAATGTCTCAAAAACTACACTATAATGATATCAGAGCAAAAAAAGTTA-ATGATTGATAATGATTATGATTATGATATCGAAGTAGTGAATCATGCCTTAGAGCTCCCACTTCATCGGAGGACCACAAGAACAGAAGCAAAGTGGTTCATTGACGCATATGCGAAAAAACAAGACATGAATCCTATGTTGCTTGAGTTAGCCAAACTCGATTTCAACATAGTACAATCAACACATCATGAAGATCTAAAACATATATTC-AGGTGGTGGAGACATACTAAACTTGGAGAGAAATTGAATTTTGCAAGAGATCGATTGATGGAATGTTTCTTATGGAATATTGGAATAAGATTTGAGTCAAAATTCAGCTATTTTAGAACAAAAACTGCCAAATTATTTGAGCTAGTAACATTTATAGATGATATATATGATGTTTATGGAACATTGGATGAATTAGAGCTTTTCACCAAAGCTGTTGAGAGATGGGATGTGAAAATGATAAATGAGTTACCAGAATACATGAAGATGCCTTATCTTGTTTTACACAATACCATAAATGATATGGTATTTGAGGTGTTAAGAGACCAAGAAATTTCCATCAACATTCAATACCTTAAGAAAACGTGGGTCGATATGTGTAAAAGTTTCTTGCAAGAGGCAAAATGGTACTATAGTGGATACACACCAACATTGGAAGAATATATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTT-TTTTCACGCAAATAATAATCGTACAATTACAAATACTAAAGAGATTTTCGAATGCTTGGAATATGGTTATTATCCTGCCATTATTCGTCACAGTGCCATAATATTACGATTTACAAATGACCTAGCAACATCATCGGAGGAATTGAAAAGAGGTGATGCTCCGACATCAATTCAATGTTACATGCAAGAAAAAAATGTATCTGAAGAGGAAGCTCGTGAACATGTTAAGTTTTTAATAAATGAAGCATGGAAGGAGATGAATAATGATGTTGG-ATT-AT-ATCCAA-T-C-TCATTGACTGAAGATGCTACAAACTTTGCTAAGA-TGGGATTTTTCATATATCAACATGGTGATGGTCATAGTTCTCAAGATAAT 1847

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BLAST of TPS40 vs. Genbank
Match Name: XM_030645438.1
Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716604), mRNA

HSP 1 Score: 1040.78 bits (563), Expect = 0.000e+0
Identity = 1299/1650 (78.73%), Postives = 1299/1650 (78.73%), Query Frame = 1

Query:       84 TATTGTTCGAAGATCGGCAAATTATGA-ACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGC-AATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGA-ATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAATATTACTAACCATAATTATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAGAAATTTTTAAT-ATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAAC-CAAGTGTCTCGAAAATTAC---ATGATGATAACGGAGGAAAACAAATTAGATGA-TGATGATGATCGTAATAAT-ATTATTGTAGT-AATTA--G-A-CATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACAT-TTGTCTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTTTAGGAGAATATCTGCAAGAATATATGTTCTTATTACAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGAAAAACACTT-TG--TCAACATTGAATGCCTCAAGAAAACGTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTATAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTTCAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTTCTCTTTTGCAAAT------C-C-CA-TAAC------TAAAGAGGTTTTGGAAATCTTCCAACAAGG---TTATCCCACAATAATTCGTCAATCTGCCATGATCGTACGTTTGGCAAATGATCTAGCAACATCATCTGAGGAATTCGAAAGAGGTGACTCGCCTAAATCAATTCAATGTTACATGCAAGACCATAATGTATCTAAAGAGGAAGCTCATGAATACATTAAGTTTTCAATAAGAGAAACATGGAAGGAGATGAATAGTACTTTTAATATTGAAGATGGAAATTCATCATTGGTTGATGATGCCAAAAACTTTGC-AAGAATGGGATTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGATAAT 1695
                ||||| |||| |||| || || | |||  ||||| ||||||||||| ||||| |||||||||||| ||| ||||||||||| |||||| |||||| | | | | ||| || ||  ||| ||| ||||||| |||| |  || || ||||||   || ||||||   | ||| ||  | || || ||||||||||| |||||| ||||||||| |||| || |||||||||| |||||||||||   | || | | | ||| | |||| | |||| | |   || |  || || ||||||||||   || |||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||| || |||| ||  |||||| | ||| | | ||| | |   ||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || ||||| || || || |||| |||  |||||||||| ||| | |||  | || |||   || |||||| |  | ||||  || ||| |||| |||| |||||  | || || |||||  ||   || ||  | | || || || ||||| ||||||||| |||||||| ||||||| || || |||||||| ||||| |  || ||||||| |||||| |||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||  ||||| ||||||||||||||| |  || ||||||||||| ||||||||||| || || ||  |||||||||  |||||| | |||||||  ||||| ||||||||  ||||| |||||||||||||| | ||||| || ||||| | || | |||| | | ||| ||  || || ||| |||| |||||||||||||||||||| |||||||| || |||||||||||||||||    | | |||||||||||||| |  || |  |||| || |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||| ||| || ||||||| |||  ||||| | |   |||||||| ||| ||| |||||||||||||| ||||||||||||  |||| |||||||||||||||||||||||| |||||| ||||||||| |  ||||||| ||| ||||||||||||||||||| |||||||| ||| |  |||||||||||||||| |||  |||||||      | | || | ||      ||||||| |||| |||  |||  |||| ||   ||||||| | |||||||||||   |||||| ||  ||||  |  ||||||| |||||||||||||| |||||| |  ||||||||||  | || | ||||||||||||||| ||||||||  | || |||||| | ||| |||||| |||| | |||||||||| |||||| |||| |||||| |||||||||| |  | ||   ||| |  ||  || | | |||||| |||| ||||| | ||| ||||| |||| ||||||| || |||||||| ||||| ||||| ||||||||||||||||||
Sbjct:      207 TATTGATCGACGATCTGCCAACTTTGAGCCCTCC-ATTTGGTCTTTTGATTATATTCAATCTCTTACAAGCCAATATAAGGAAGAATCTTATACAGGTCGAGTCAAAGAA-TTGGAGATAGATGTGAAAAAGATGTTAATT-GAGATGGAA---AATTCTTTAATTCAACTTGAACTCATTGACACATTGCAAAGACTTGGAGTATCTTATCGTTTTGAGGATGAAATAAATACTATTTTGAA---AGAA-A-A-ATATATTAATATGATCAAT-A-A-CCCT-A--ATTATAATAATTTATATGTCACTGCTCTTGAATTTAGGCTTCTACGTCAACATGGCTATGCAGTACCTCAAGAGATTTTTAATCATTTT-AAGGACGAGATAGGAAAAATCAAAACGAACATGATTAGTGATGATATTATGGAAGTATTGGCCTTATATGAAGCTTCATTCTATGAGAAAAAAGGCGAAAGTATTTTAGAAGAAGTTAGAATTTTCACAACTCAA-TATCTAAAGAACTACATTATAATGATATCACAAGAAAGAAAGTTA-ATGATTGATAATGATAATGATTATGATTATGATATCGAAATAGTGAATCACGCTTTGGAGCTCCCACTTCATCGGAGGACTACAAGAACAGAAGCTAAGTGGTTCATCGACGCGTATGAGAAAAAACAAGACATGAATCCTATTTTGCTTGAGTTTGCTAAACTCGATTTCAACATGATACAATCAACACATCATGACGATCTAAAACATATATTC-AGGTGGTGGAGGCATACTAAACTTGGGGAGAATTTGAATTTTGCAAGAGATCGATTGATGGAATGTTTCTTATGGAAAATTGGAATAAGATTTGAGCCAAAATTCAGTTATTTTAGAATAACAACTGCCAAATTATTTGAGCTAATAACAGTAATTGATGATATATATGATGTTTATGGAACATTGGATGAATTAGAGCTTTTCACCAAAGCTATTGAGAGATGGGATATGGAAATGATAAATGAGTTACCAGAATATATGAAGATGCCTTATATTGTTTTACACAATACCATTAATGAAATGGTATTTGAGGTATTAAGAGACCAACACATCTCCATCAACATTCAATACCTTAAGAAAACGTGGGTAGATATGTGTAGAGGTTTTTTACAAGAGGCAAAATGGTACTATAGTGGATATACACCAACACTAGAAGAATATATTAAAAATGGTTGGATTTCAGTGGGAGCACCGGTTCTAATTGTGCATGCTTATTTTTCTCATGCAAATTATAATCACACAGTTACAAGTAGTAAAGAGATTTTCGAATGCTTTGAACATGGTTATTATCCCGCCATAATTCGTCATAGTGCCATAATATTACGACTTACAAATGACCTAGCAACATCATCGGAGGAACTGAAAAGAGGTGATGCTCCGACATCAATTCAATGTTATATGCAAGAAAAAAAAGTATCTGAGGAGAAAGCTCGTGAACATATTAAGTTTTTAATAAGTGAAATATGGAAAGAGATGAATAATGATGTTGG-ATT-AT-ATCCAA-T-C-TCATTGATTGAAGATGCTACAAATTTTGCTAAGA-TGGGATTTTTCATGTATCAGCATGGTGATGGTCATAGTTCTCAAGATAAT 1827

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BLAST of TPS40 vs. Genbank
Match Name: XM_030644767.1
Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716063), transcript variant X2, mRNA

HSP 1 Score: 944.758 bits (511), Expect = 0.000e+0
Identity = 994/1223 (81.28%), Postives = 994/1223 (81.28%), Query Frame = 1

Query:       12 ATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATAATAGTAGCCCTAGCTCTAC---TACTAAATTTTCTATTGTTCGAAGATCGGCAAATTATGAACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCAACCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAAAGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTTTAGCCCTACTCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAACAATAA------TATTACTAACCATAATT---ATAATTTATACCCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAGAAATTTTTAATATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGATATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATG--A-GAAAAATGGTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAAAATTACATG-A-----TG-ATAACG-G-A-G-GAAAACAA-ATTAG-ATGATGATGATGATCGTAATAATATTA-TT-G-TAGTAATTAGACATGCGTTAGAGCTTCCACTTCATTGGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATG---TATACGAGAAAAGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAACATGGTACAATCAATGCATCAAGACGATCTAAAACATTTGTCTAGGTGGTGGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTGATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAGCTACTTTAGGAGAATATCTGCAAGAATATATGTTCTTATTACAATAATCGATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACTCGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTATATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCATTAGATGTATTAAAAGAAAAACACTTTGTCAACATTGAATGCCTCAAGAAA 1200
                ||||||||||||||||||||| |||||||||||||||    |||  | |||||| |||||   |||| ||  |  || || ||||||||| || || |||| |||||| ||||||||||| ||||  |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||| || ||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||      ||||||||||| |||||   ||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||| ||   ||| || ||||||||| ||  | | | |   ||||||||||||||| |||||   ||||||||||||||||||||||  | |||| |||   |||  || ||||||||||| ||  ||||  |||| || |||||  |||| |||||| |     || | || | | | | ||||| || ||||  || | |||||| ||  || ||||| || || | || ||||||  || || || |||||||| ||||||||||| |   ||||| |||| || | |||||| || || |   |||| ||||||| |||||| |||||||| |||||| | |||||||| ||| ||||||| || || || |||||||  || ||||| ||| || ||||||| || |||||||||||  ||  |||||| || |  ||| |||||||||  |||||||| |||||||    ||| |||||| |||||||| ||| ||| |||  ||| |||||||| ||||| ||||||  ||||||| ||| ||| ||||| |||||||| |||||||| |||||||| || ||||| || || |||||||||||||||||| ||| |||||| ||||||||||| ||| || | || || ||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| ||||  || |||||||||  | || || |||||||||||||||||| ||| ||||||
Sbjct:      198 ATCAAGTACTTGCTACCCCATACAATGTACTGTGGTC---GATA--A-CCCTAGTTCTACGATTACT-AA--TAATAGTGATCGAAGATCAGCCAACTATGGACCTCCCATTTGGTCTTTTGATTTTATTCAATCTCTTCCAATCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTGAAGAAAGAAGTGACAAGAATGGTCCTTGGACTGGAAATTAACTCTTTAGCCCTACTTGAGCTAATTGATACATTGCAAAGGCTTGGAATATCTTACCATTTTAAGAATGAAATAAACACTATTTTGAAGAAAAAATACACTGATAATTATATTAACAATAATATTATTATTACTAACCCTAATTATAATAATTTATATGCCATTGCTCTCGAATTTAGGCTTCTACGCCAACATGGCTATACAGTACCTCAAGAAATTTTTAATGCTTTCAAGGATAAGAGAGGGAAATTTAAAACATGCTTGAGT---GATGATATTATGGGAGTATTGTGTTTATATGAAGCTTCATTCTATGCTATGAAACATGA--AAAT-ATTTTGGAGGAAGCAAGAATTTTTTCAACTAAATGTCTTAAAAAATACATGGAGAAAATGGAGAATGAGGAAGAGAAAAAAATATTATTATTA-GATGATAATAATATTAATAGTAATTTGCTATTAATTAATCACGCTTTCGAGCTTCCGCTTCATTGGAGAATAACAAGATCGGAAGCTAGGTGGTTCATTGACGAAATATATGAGAAAAAACAAGACATGAATTCGACTTTGTTCGAGTTTGCGAAATTAGATTTTAATATAGTGCAATCAACACACCAAGAAGATTTACAACATTTATCGAGGTGGTGGAGGGATTGTAAACTTGGTGGGAAATTGAATTTTGCTAGAGATAGATTGATGGAAGCTTTCTTATGGGATGTTGGACTAAAATTCGAGGGAGAATTCAGCTATTTTAGAAGAATAAATGCAAGATTATTTGTGCTTATAACAATAATTGATGATATTTATGATGTATATGGAACTTTGGAGGAATTAGAGCTTTTCACTAGTGCTGTTGAAAGATGGGATGTGAAATTAATCAATGAGTTACCAGATTACATGAAGATGCCTTTCTTTGTTTTACACAATACCATAAATGAGATGGGGTTCGATGTATTAGTACAACAAAACTTTGTCAACATTGAATACCTTAAGAAA 1404

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BLAST of TPS40 vs. Genbank
Match Name: XM_030640479.1
Description: PREDICTED: Cannabis sativa pentatricopeptide repeat-containing protein At2g13600 (LOC115712221), transcript variant X2, mRNA

HSP 1 Score: 71.293 bits (38), Expect = 3.858e-11
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1

Query:       12 ATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATA 52
                |||||||||||||||||||||||||||| ||||||||||||
Sbjct:      112 ATCAAGTACTTGCTACCCCATCCAATGTGCTGTGGTCAATA 72

[Close]

BLAST of TPS40 vs. Genbank
Match Name: XM_030640478.1
Description: PREDICTED: Cannabis sativa pentatricopeptide repeat-containing protein At2g13600 (LOC115712221), transcript variant X1, mRNA

HSP 1 Score: 71.293 bits (38), Expect = 3.858e-11
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1

Query:       12 ATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAATA 52
                |||||||||||||||||||||||||||| ||||||||||||
Sbjct:      112 ATCAAGTACTTGCTACCCCATCCAATGTGCTGTGGTCAATA 72


Match Name	Summary
XM_030645191.1	E-Value: 0.000e+0, PID: 79.34 Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716405), mRNA [more]
XM_030644766.1	E-Value: 0.000e+0, PID: 79.22 Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716063), transcript variant X1, mRNA [more]
XM_030645439.1	E-Value: 0.000e+0, PID: 79.32 Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716605), mRNA [more]
XM_030645438.1	E-Value: 0.000e+0, PID: 78.73 Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716604), mRNA [more]
XM_030644767.1	E-Value: 0.000e+0, PID: 81.28 Description: PREDICTED: Cannabis sativa myrcene synthase, chloroplastic (LOC115716063), transcript variant X2, mRNA [more]
XM_030640479.1	E-Value: 3.858e-11, PID: 97.56 Description: PREDICTED: Cannabis sativa pentatricopeptide repeat-containing protein At2g13600 (LOC115712221), transcript variant X2, mRNA [more]
XM_030640478.1	E-Value: 3.858e-11, PID: 97.56 Description: PREDICTED: Cannabis sativa pentatricopeptide repeat-containing protein At2g13600 (LOC115712221), transcript variant X1, mRNA [more]

Interpro result TPS-TSA-THC Csativa

Performed on: 2021-09-02
Display provided by the neXtProt Feature Viewer


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 42..42
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..22
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 23..41
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 32..47
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..31
None	No IPR available	TMHMM	TMhelix		coord: 7..29
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 31..61
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..30
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	TMHMM	TMhelix		coord: 13..30
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 28..40
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..27
None	No IPR available	TMHMM	TMhelix		coord: 5..27
None	No IPR available	COILS	Coil	Coil	coord: 55..75
None	No IPR available	PANTHER	PTHR31225:SF9		coord: 30..579
None	No IPR available	PANTHER	PTHR31225	FAMILY NOT NAMED	coord: 30..579
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..28
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 29..49
None	No IPR available	TMHMM	TMhelix		coord: 6..28
None	No IPR available	COILS	Coil	Coil	coord: 36..40
IPR005630	Terpene synthase, metal-binding domain	PFAM	PF03936	Terpene_synth_C	coord: 259..525 e-value: 4.6E-99 score: 331.1
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10		coord: 40..564 e-value: 5.3E-192 score: 640.7
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 254..579
IPR001906	Terpene synthase, N-terminal domain	PFAM	PF01397	Terpene_synth	coord: 41..208 e-value: 9.4E-49 score: 165.7
IPR036965	Terpene synthase, N-terminal domain superfamily	GENE3D	1.50.10.130		coord: 77..253 e-value: 5.3E-192 score: 640.7
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 38..254

TPS40

Reanalysis of 21 trichome RNA-Seq samples, FN-clones109 (TMM50 minvalue)

Reanalysis of 21 trichome RNA-Seq samples, PK-clones109 (TMM50 minvalue)

Interpro result TPS-TSA-THC Csativa

blastn of TPS CDS against cs10 mRNA

blastn of TPS CDS against cs10 genome

blastn of TPS CDS against pkv5 mRNA

blastn of TPS CDS against pkv5 genome

NCBI Download

Sequences

Sequence	TCAAAATCAAAATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAA TAATAGTAGCCCTAGCTCTACTACTAAATTTTCTATTGTTCGAAGATCGG CAAATTATGAACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCA ACCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAA AGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTTTAGCCCTAC TCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAG AATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAA CAATAATATTACTAACCATAATTATAATTTATACCCCATTGCTCTCGAAT TTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAGAAATTTTTAAT ATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGA TATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATG GTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAA AATTACATGATGATAACGGAGGAAAACAAATTAGATGATGATGATGATCG TAATAATATTATTGTAGTAATTAGACATGCGTTAGAGCTTCCACTTCATT GGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAA AGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAA CATGGTACAATCAATGCATCAAGACGATCTAAAACATTTGTCTAGGTGGT GGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTG ATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAG CTACTTTAGGAGAATATCTGCAAGAATATATGTTCTTATTACAATAATCG ATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACT CGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTA TATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCAT TAGATGTATTAAAAGAAAAACACTTTGTCAACATTGAATGCCTCAAGAAA ACGTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTA TAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTT CAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTTCTCTTTTGCAAAT CCCATAACTAAAGAGGTTTTGGAAATCTTCCAACAAGGTTATCCCACAAT AATTCGTCAATCTGCCATGATCGTACGTTTGGCAAATGATCTAGCAACAT CATCTGAGGAATTCGAAAGAGGTGACTCGCCTAAATCAATTCAATGTTAC ATGCAAGACCATAATGTATCTAAAGAGGAAGCTCATGAATACATTAAGTT TTCAATAAGAGAAACATGGAAGGAGATGAATAGTACTTTTAATATTGAAG ATGGAAATTCATCATTGGTTGATGATGCCAAAAACTTTGCAAGAATGGGA TTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGATAATTTAGC AAAAGAGCGTATTTCGAAATTCATTATCAATCCTATA
Sequence Length	1737
Sequence Checksum	82f205826d80e0d9febc7e5dbb7970b6

Sequence

TCAAAATCAAAATCAAGTACTTGCTACCCCATCCAATGTACTGTGGTCAA
TAATAGTAGCCCTAGCTCTACTACTAAATTTTCTATTGTTCGAAGATCGG
CAAATTATGAACCTCCGATTTGGTCTTTCGATTACATTCAATCTCTTTCA
ACCCAATATAAGGGAGAATCCTATACAAGGCAATTAAATAAGTTAAAGAA
AGAAGTGAAAAGGATGCTCCTTCGAATGGAAGTTAACTCTTTAGCCCTAC
TCGAGTTAATCGATACATTGCAAAGGCTTGGAATATCTTATCATTTTAAG
AATGAAATAAACACTATTTTGAAGAAAAAATACACAAATACTTATATTAA
CAATAATATTACTAACCATAATTATAATTTATACCCCATTGCTCTCGAAT
TTAGGCTTCTACGCCAACATGGCTATGCAGTTCCTCAAGAAATTTTTAAT
ATTTTCAAAGACGTGAGTGGAAAATTTAAAGCAATCATAAATGACGATGA
TATTATGGGAATATTGGCGTTATATGAAGCTTCATTCTATGAGAAAAATG
GTGAAAGCATATTGGAGGAAGCTAGGGTTTTCACAACCAAGTGTCTCGAA
AATTACATGATGATAACGGAGGAAAACAAATTAGATGATGATGATGATCG
TAATAATATTATTGTAGTAATTAGACATGCGTTAGAGCTTCCACTTCATT
GGAGGACTGCAAGAACGGAGGCCAAGTGGTTTATCGATGTATACGAGAAA
AGACAAGATATGAATTCTACTTTGCTTGAGTTTGCAAAACTAGATTTCAA
CATGGTACAATCAATGCATCAAGACGATCTAAAACATTTGTCTAGGTGGT
GGAGTCATACTAAACTCGGAGAAAAACTGAATTTTGTGAGAGATAGGTTG
ATGGGGTGTTTTTTATGGAATGTTGGATTAAGATTTGAGCCAGATTTCAG
CTACTTTAGGAGAATATCTGCAAGAATATATGTTCTTATTACAATAATCG
ATGATATATATGATGTTTACGGAACATTAGAAGAATTAGAGCTTTTCACT
CGTGTTGTTGAGAGATGGGATGTAAAACTACTAAAAGACTTACCAGATTA
TATGAAGATGCCTTTTCTTGTTTTACACAATACCATTAATGAAATGGCAT
TAGATGTATTAAAAGAAAAACACTTTGTCAACATTGAATGCCTCAAGAAA
ACGTGGGTTGATATGTGTAGATCTTTTCTACAAGAGGCAAAATGGTACTA
TAATGGATACACACCAACATTTCAAGAATACATTGAAAATGGTTGGATTT
CAGTAGGAGCACCAGTTATTCTTGTGCATGCTTATTTCTCTTTTGCAAAT
CCCATAACTAAAGAGGTTTTGGAAATCTTCCAACAAGGTTATCCCACAAT
AATTCGTCAATCTGCCATGATCGTACGTTTGGCAAATGATCTAGCAACAT
CATCTGAGGAATTCGAAAGAGGTGACTCGCCTAAATCAATTCAATGTTAC
ATGCAAGACCATAATGTATCTAAAGAGGAAGCTCATGAATACATTAAGTT
TTCAATAAGAGAAACATGGAAGGAGATGAATAGTACTTTTAATATTGAAG
ATGGAAATTCATCATTGGTTGATGATGCCAAAAACTTTGCAAGAATGGGA
TTATTTATGTATCAACATGGAGATGGACATAGTTCTCAAGATAATTTAGC
AAAAGAGCGTATTTCGAAATTCATTATCAATCCTATA

Sequence Length

1737

Sequence Checksum

82f205826d80e0d9febc7e5dbb7970b6

Summary

Resource Type	mRNA
Organism	Cannabis sativa L.
Name	TPS40
Identifier	TPS40
Time Accessioned	Thursday, November 21, 2024 - 09:32
Time Last Modified	Thursday, November 21, 2024 - 09:32