TPS63 | ICGRC

Annotations

Contact

Cross Reference

Location on Map

Properties

Relationship

Publication

Sequences

Summary

Annotations

This record has the following annotations.
Term	Name	Definition
GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions. [GOC:ai]
GO:0016829	lyase activity
GO:0010333	terpene synthase activity	Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units. [EC:4.2.3.-, GOC:tair_curators]
INTERPRO:IPR008930	Terpenoid_cyclase/PrenylTrfase
INTERPRO:IPR008949	Isoprenoid_synthase_dom_sf
INTERPRO:IPR036965	Terpene_synth_N_sf
INTERPRO:IPR001906	Terpene_synth_N
INTERPRO:IPR005630	Terpene_synthase_metal-bd

Click a tab below to view blast alignments.

blastn of TPS CDS against pkv5 genome

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 genome
Display provided by the neXtProt Feature Viewer

Show Results Table

[Close]

BLAST of TPS63 vs. Genbank
Match Name: CM010796.2
Description: Cannabis sativa cultivar Purple Kush chromosome 5, whole genome shotgun sequence

HSP 1 Score: 745.32 bits (403), Expect = 0.000e+0
Identity = 403/403 (100.00%), Postives = 403/403 (100.00%), Query Frame = 1

Query:      218 CAGATGTGTTTAACGAGTTGATGAAGGACAAAAAGGGAAATTTCAATGTTTTAGTGGAAGAAGACAGAGAGGGACTAAGAGAATTGTTTGAAGCCTCACAAGTAAGAATAGAAGGAGAAGAGGTACTAGAGGAAGCTGAAGTGTTCAGTGGCGAACACCTAAAAGAATGGGCAAATCTTCATCGTCATACGAGTGAAGCTCGAAGTATTCAATTAACGTTAGACCAACCTTGTCATAAAAGCTTGGCCAGGGTCACATCTCCAAACTTTTTGGACAGTTTCTCAGCCAACACTGCTACCAGAGACCAAGGCTGGACCTGGATGACCCTTTTAAACAAACTGGTCACAATGGACTTCAAAATAGTTCAGTCTATTCACCAAAGGGAAATTGTTCAAGTCTCCAA 620
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10496245 CAGATGTGTTTAACGAGTTGATGAAGGACAAAAAGGGAAATTTCAATGTTTTAGTGGAAGAAGACAGAGAGGGACTAAGAGAATTGTTTGAAGCCTCACAAGTAAGAATAGAAGGAGAAGAGGTACTAGAGGAAGCTGAAGTGTTCAGTGGCGAACACCTAAAAGAATGGGCAAATCTTCATCGTCATACGAGTGAAGCTCGAAGTATTCAATTAACGTTAGACCAACCTTGTCATAAAAGCTTGGCCAGGGTCACATCTCCAAACTTTTTGGACAGTTTCTCAGCCAACACTGCTACCAGAGACCAAGGCTGGACCTGGATGACCCTTTTAAACAAACTGGTCACAATGGACTTCAAAATAGTTCAGTCTATTCACCAAAGGGAAATTGTTCAAGTCTCCAA 10495843

HSP 2 Score: 486.789 bits (263), Expect = 3.776e-135
Identity = 269/272 (98.90%), Postives = 269/272 (98.90%), Query Frame = 1

Query:     1220 AGGATGAGAATCAAAATGGGCATGATGGGTCTTACGTTGAGTGCTACATGAAAAGACACAAGGAGTGTTCAATGGGCGAAGCAAGGGAGCAAGTGATTCGTATGATTAAAAATGAGTGGGAACGCCTCAATAAGGAGTGTTTCTCGCCAAAACATTTTCCCATGTGCTTCAGAAAGGGTTGTCTTAATGCTGCTAGGATGGTTCCAGTGATGTATGACTATGATGATCATCATCGCCTTCCAAGCCTCCAGAATTATATCAACTCACTTCTC 1491
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 10493651 AGGATGAGAATCAAAATGGGCATGATGGGTCTTACGTTGAGTGCTACATGAAAAGACACAAAGAGTGTTCAATGGGCGAAGCAAGGGAGCAAGTGATTCGTATGATTAAAAATGAGTGGGAACGCCTCAATAAGGAGTGTTTCTCGTCAAAACATTTTCCCATGTGCTTCAGAAAGGGTTGTCTTAATGCTGCTAGGATGGTTCCAGTGATGTATGACTATGATGATCATCATCGCCTTCCAGGCCTCCAGAATTATATCAACTCACTTCTC 10493380

HSP 3 Score: 464.629 bits (251), Expect = 1.769e-128
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 1

Query:      972 GTGGGGAAAACTGTGCAATGCGTTCTTGTTAGAAGCAGAGTGGTTTGGTTGTGGGAAGTTGCCAAATGAAGAGGAGTATTTGAAGAACGCGATTGTGAGTTCTGGTGTACACGTGGTGCTAGTTCATATGTTCTTTCTCTTAGGTGAAGGTATATCCATGGAAGCTGTAAACTTACTGGACAACATTCCAGGCCTTGTGTCTTCTACAGCAGCAATTCTTCGTCTTTGGGATGACTTAGGAAGTGCCAAGG 1222
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10494025 GTGGGGAAAACTGTGCAATGCGTTCTTGTTAGAAGCAGAGTGGTTTGGTTGTGGGAAGTTGCCAAATGAAGAGGAGTATTTGAAGAACGCGATTGTGAGTTCTGGTGTACACGTGGTGCTAGTTCATATGTTCTTTCTCTTAGGTGAAGGTATATCCATGGAAGCTGTAAACTTACTGGACAACATTCCAGGCCTTGTGTCTTCTACAGCAGCAATTCTTCGTCTTTGGGATGACTTAGGAAGTGCCAAGG 10493775

HSP 4 Score: 407.383 bits (220), Expect = 3.024e-111
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 1

Query:        1 GAACGCTCCATAGAAGCTTTGAACTTGGTCAACGCTGTGCTTAGAGTCGGCATTGATTATCATGTCCAAGATGAGATTAAATCTATCCTTGAAAGGGAACATATAATTTTCAGTGACCATATTAGTAACCAATATTTTAATAATATTAATCAAGACCACCTGTATGAGGTTTCTCTTCGTTTCCGATTACTGAGACAAGGAGGTTATGATGTCTCTCCAG 220
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10496576 GAACGCTCCATAGAAGCTTTGAACTTGGTCAACGCTGTGCTTAGAGTCGGCATTGATTATCATGTCCAAGATGAGATTAAATCTATCCTTGAAAGGGAACATATAATTTTCAGTGACCATATTAGTAACCAATATTTTAATAATATTAATCAAGACCACCTGTATGAGGTTTCTCTTCGTTTCCGATTACTGAGACAAGGAGGTTATGATGTCTCTCCAG 10496357

HSP 5 Score: 405.537 bits (219), Expect = 1.088e-110
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1

Query:      621 ATGGTGGAAAGAGCTTGGTTTGGCAGAGGAGTTGAAATTTGCTAGAGACCAACCCCTAAAATGGTACCTCTGGACAGTGGCAAGTCTACCAGATCCAAGCTTGTCTGAAGAGAGGATTGAACTAACTAAACCCATTTCTCTCGTCTACATAATAGATGATATTTTTGATGTTTATGGGACACTAGACGAACTCACTCTTTTCACAGACGCAGTTAATAA 839
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10495625 ATGGTGGAAAGAGCTTGGTTTGGCAGAGGAGTTGAAATTTGCTAGAGACCAACCCCTAAAATGGTACCTCTGGACAGTGGCAAGTCTACCAGATCCAAGCTTGTCTGAAGAGAGGATTGAACTAACTAAACCCATTTCTCTCGTCTACATAATAGATGATATTTTTGATGTTTATGGGACACTAGACGAACTCACTCTTTTCACAGACGCAGTTAATAA 10495407

HSP 6 Score: 246.725 bits (133), Expect = 6.977e-63
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1

Query:      840 TTGGGAAATTAAAGAGCAGTTACCCGACTATTTGAAGATATGTTTCAAGGCACTTGATGATATAACCAACAAAATTAGCTACGTGGTGTACAGAAAACATGGATGGAACCCAATTGACTCCTTAAGAAAATCG 972
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10494924 TTGGGAAATTAAAGAGCAGTTACCCGACTATTTGAAGATATGTTTCAAGGCACTTGATGATATAACCAACAAAATTAGCTACGTGGTGTACAGAAAACATGGATGGAACCCAATTGACTCCTTAAGAAAATCG 10494792


Match Name	Summary
CM010796.2	E-Value: 3.776e-135, PID: 100.00 Description: Cannabis sativa cultivar Purple Kush chromosome 5, whole genome shotgun sequence [more]

blastn of TPS CDS against pkv5 mRNA

Performed on: 2020-09-04
Details: blastn of TPS CDS against pkv5 mRNA
Display provided by the neXtProt Feature Viewer

Show Results Table

[Close]

BLAST of TPS63 vs. Genbank
Match Name: PKGMv1-14310_t
Description: No definition line

HSP 1 Score: 1380.57 bits (747), Expect = 0.000e+0
Identity = 807/831 (97.11%), Postives = 807/831 (97.11%), Query Frame = 1

Query:        1 GAACGCTCCATAGAAGCTTTGAACTTGGTCAACGCTGTGCTTAGAGTCGGCATTGATTATCATGTCCAAGATGAGATTAAATCTATCCTTGAAAGGGAACATATAATTTTCAGTGACCATATTAGTAACCAATATTTTAATAATATTAATCAAGACCACCTGTATGAGGTTTCTCTTCGTTTCCGATTACTGAGACAAGGAGGTTATGATGTCTCTCCAGATGTGTTTAACGAGTTGATGAAGGACAAAAAGGGAAATTTCAATGTTTTAGTGGAAGAAGACAGAGAGGGACTAAGAGAATTGTTTGAAGCCTCACAAGTAAGAATAGAAGGAGAAGAGGTACTAGAGGAAGCTGAAGTGTTCAGTGGCGAACACCTAAAAGAATGGGCAAATCTTCATCGTCATACGAGTGAAGCTCGAAGTATTCAATTAACGTTAGACCAACCTTGTCATAAAAGCTTGGCCAGGGTCACATCTCCAAACTTTTTGGACAGTTTCTCAGCCAACACTGCTACCAGAGACCAAGGCTGGACCTGGATGACCCTTTTAAACAAACTGGTCACAATGGACTTCAAAATAGTTCAGTCTATTCACCAAAGGGAAATTGTTCAAGTCTCCAAATGGTGGAAAGAGCTTGGTTTGGCAGAGGAGTTGAAATTTGCTAGAGACCAACCCCTAAAATGGTACCTCTGGACAGTGGCAAGTCTACCAGATCCAAGCTTGTCTGAAGAGAGGATTGAACTAACTAAACCCATTTCTCTCGTCTACATAATAGATGATATTTTTGATGTTTATGGGACACTAGACGAACTCACTCTTTTCACAGACGCA 831
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:       70 GAACGCTCCATAGAAGCTTTGAACTTGGTCAACGCTGTGCTTAGAGTCGGCATTGATTATCATGTCCAAGATGAGATTAAATCTATCCTTGAAAGGGAACATATAATTTTCAGTGACCATATTAGTAACCAATATTTTAATAATATTAATCAAGACCACCTGTATGAGGTTTCTCTTCGTTTCCGATTACTGAGACAAGGAGGTTATGAT------------------------TTGATGAAGGACAAAAAGGGAAATTTCAATGTTTTAGTGGAAGAAGACAGAGAGGGACTAAGAGAATTGTTTGAAGCCTCACAAGTAAGAATAGAAGGAGAAGAGGTACTAGAGGAAGCTGAAGTGTTCAGTGGCGAACACCTAAAAGAATGGGCAAATCTTCATCGTCATACGAGTGAAGCTCGAAGTATTCAATTAACGTTAGACCAACCTTGTCATAAAAGCTTGGCCAGGGTCACATCTCCAAACTTTTTGGACAGTTTCTCAGCCAACACTGCTACCAGAGACCAAGGCTGGACCTGGATGACCCTTTTAAACAAACTGGTCACAATGGACTTCAAAATAGTTCAGTCTATTCACCAAAGGGAAATTGTTCAAGTCTCCAAATGGTGGAAAGAGCTTGGTTTGGCAGAGGAGTTGAAATTTGCTAGAGACCAACCCCTAAAATGGTACCTCTGGACAGTGGCAAGTCTACCAGATCCAAGCTTGTCTGAAGAGAGGATTGAACTAACTAAACCCATTTCTCTCGTCTACATAATAGATGATATTTTTGATGTTTATGGGACACTAGACGAACTCACTCTTTTCACAGACGCA 876

HSP 2 Score: 837.653 bits (453), Expect = 0.000e+0
Identity = 457/459 (99.56%), Postives = 457/459 (99.56%), Query Frame = 1

Query:      973 TGGGGAAAACTGTGCAATGCGTTCTTGTTAGAAGCAGAGTGGTTTGGTTGTGGGAAGTTGCCAAATGAAGAGGAGTATTTGAAGAACGCGATTGTGAGTTCTGGTGTACACGTGGTGCTAGTTCATATGTTCTTTCTCTTAGGTGAAGGTATATCCATGGAAGCTGTAAACTTACTGGACAACATTCCAGGCCTTGTGTCTTCTACAGCAGCAATTCTTCGTCTTTGGGATGACTTAGGAAGTGCCAAGGATGAGAATCAAAATGGGCATGATGGGTCTTACGTTGAGTGCTACATGAAAAGACACAAGGAGTGTTCAATGGGCGAAGCAAGGGAGCAAGTGATTCGTATGATTAAAAATGAGTGGGAACGCCTCAATAAGGAGTGTTTCTCGCCAAAACATTTTCCCATGTGCTTCAGAAAGGGTTGTCTTAATGCTGCTAGGATGGTTCCAGTGATG 1431
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:      877 TGGGGAAAACTGTGCAATGCGTTCTTGTTAGAAGCAGAGTGGTTTGGTTGTGGGAAGTTGCCAAATGAAGAGGAGTATTTGAAGAACGCGATTGTGAGTTCTGGTGTACACGTGGTGCTAGTTCATATGTTCTTTCTCTTAGGTGAAGGTATATCCATGGAAGCTGTAAACTTACTGGACAACATTCCAGGCCTTGTGTCTTCTACAGCAGCAATTCTTCGTCTTTGGGATGACTTAGGAAGTGCCAAGGATGAGAATCAAAATGGGCATGATGGGTCTTACGTTGAGTGCTACATGAAAAGACACAAAGAGTGTTCAATGGGCGAAGCAAGGGAGCAAGTGATTCGTATGATTAAAAATGAGTGGGAACGCCTCAATAAGGAGTGTTTCTCGTCAAAACATTTTCCCATGTGCTTCAGAAAGGGTTGTCTTAATGCTGCTAGGATGGTTCCAGTGATG 1335


Match Name	Summary
PKGMv1-14310_t	E-Value: 0.000e+0, PID: 97.11 Description: No definition line [more]

blastn of TPS CDS against cs10 genome

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 genome
Display provided by the neXtProt Feature Viewer

Show Results Table

[Close]

BLAST of TPS63 vs. Genbank
Match Name: NC_044371.1
Description: Cannabis sativa chromosome 1, cs10, whole genome shotgun sequence

HSP 1 Score: 695.461 bits (376), Expect = 0.000e+0
Identity = 394/403 (97.77%), Postives = 394/403 (97.77%), Query Frame = 1

Query:      218 CAGATGTGTTTAACGAGTTGATGAAGGACAAAAAGGGAAATTTCAATGTTTTAGTGGAAGAAGACAGAGAGGGACTAAGAGAATTGTTTGAAGCCTCACAAGTAAGAATAGAAGGAGAAGAGGTACTAGAGGAAGCTGAAGTGTTCAGTGGCGAACACCTAAAAGAATGGGCAAATCTTCATCGTCATACGAGTGAAGCTCGAAGTATTCAATTAACGTTAGACCAACCTTGTCATAAAAGCTTGGCCAGGGTCACATCTCCAAACTTTTTGGACAGTTTCTCAGCCAACACTGCTACCAGAGACCAAGGCTGGACCTGGATGACCCTTTTAAACAAACTGGTCACAATGGACTTCAAAATAGTTCAGTCTATTCACCAAAGGGAAATTGTTCAAGTCTCCAA 620
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |  ||||||||
Sbjct: 93263552 CAGATGTGTTTAACGAGTTGATGAAGGACAAAAAGGGAAATTTCAATGTTTTAGTGGAAGAAGACAGAGAGGGACTAAGAGAATTGTTTGAAGCCTCACAAGTAAGAATAGAAGGAGAAGAGGTACTAGAGGAAGCTGAAGTGTTCAGTGGCGGACACCTAAAAGAATGGGCAAATCTTCATCGTCATACGAGTGAAGCTCGAAGTATTCAATTAACGCTAGACCAACCTTGTCATAAAAGCTTGGCCAGGGTCACATCTCCAAACTTTTTGGACAGTTTCTCGGCCAACACTACTACCATAGACCAAGGCTGGACCTGGATGACCCTTTTAAACAAACTGGTCACAATGGACTTCAAAATAGTACAGTCTATTCACCAAAGGGAAATTGTCCTTGTCTCCAA 93263150

HSP 2 Score: 492.329 bits (266), Expect = 7.974e-137
Identity = 270/272 (99.26%), Postives = 270/272 (99.26%), Query Frame = 1

Query:     1220 AGGATGAGAATCAAAATGGGCATGATGGGTCTTACGTTGAGTGCTACATGAAAAGACACAAGGAGTGTTCAATGGGCGAAGCAAGGGAGCAAGTGATTCGTATGATTAAAAATGAGTGGGAACGCCTCAATAAGGAGTGTTTCTCGCCAAAACATTTTCCCATGTGCTTCAGAAAGGGTTGTCTTAATGCTGCTAGGATGGTTCCAGTGATGTATGACTATGATGATCATCATCGCCTTCCAAGCCTCCAGAATTATATCAACTCACTTCTC 1491
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 93260957 AGGATGAGAATCAAAATGGGCATGATGGGTCTTACGTTGAGTGCTACATGAAAAGACACAAGGAGTGTTCAATGGGCGAAGCAAGGGAGCAAGTGATTCGTATGATTAAAAATGAGTGGGAACGCCTCAATAAGGAGTGTTTCTCGTCAAAACATTTTCCCATGTGCTTCAGAAAGGGTTGTCTTAATGCTGCTAGGATGGTTCCAGTGATGTATGACTATGATGATCATCATCGCCTTCCAGGCCTCCAGAATTATATCAACTCACTTCTC 93260686

HSP 3 Score: 464.629 bits (251), Expect = 1.738e-128
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 1

Query:      972 GTGGGGAAAACTGTGCAATGCGTTCTTGTTAGAAGCAGAGTGGTTTGGTTGTGGGAAGTTGCCAAATGAAGAGGAGTATTTGAAGAACGCGATTGTGAGTTCTGGTGTACACGTGGTGCTAGTTCATATGTTCTTTCTCTTAGGTGAAGGTATATCCATGGAAGCTGTAAACTTACTGGACAACATTCCAGGCCTTGTGTCTTCTACAGCAGCAATTCTTCGTCTTTGGGATGACTTAGGAAGTGCCAAGG 1222
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93261331 GTGGGGAAAACTGTGCAATGCGTTCTTGTTAGAAGCAGAGTGGTTTGGTTGTGGGAAGTTGCCAAATGAAGAGGAGTATTTGAAGAACGCGATTGTGAGTTCTGGTGTACACGTGGTGCTAGTTCATATGTTCTTTCTCTTAGGTGAAGGTATATCCATGGAAGCTGTAAACTTACTGGACAACATTCCAGGCCTTGTGTCTTCTACAGCAGCAATTCTTCGTCTTTGGGATGACTTAGGAAGTGCCAAGG 93261081

HSP 4 Score: 407.383 bits (220), Expect = 2.971e-111
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 1

Query:        1 GAACGCTCCATAGAAGCTTTGAACTTGGTCAACGCTGTGCTTAGAGTCGGCATTGATTATCATGTCCAAGATGAGATTAAATCTATCCTTGAAAGGGAACATATAATTTTCAGTGACCATATTAGTAACCAATATTTTAATAATATTAATCAAGACCACCTGTATGAGGTTTCTCTTCGTTTCCGATTACTGAGACAAGGAGGTTATGATGTCTCTCCAG 220
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93263878 GAACGCTCCATAGAAGCTTTGAACTTGGTCAACGCTGTGCTTAGAGTCGGCATTGATTATCATGTCCAAGATGAGATTAAATCTATCCTTGAAAGGGAACATATAATTTTCAGTGACCATATTAGTAACCAATATTTTAATAATATTAATCAAGACCACCTGTATGAGGTTTCTCTTCGTTTCCGATTACTGAGACAAGGAGGTTATGATGTCTCTCCAG 93263659

HSP 5 Score: 405.537 bits (219), Expect = 1.069e-110
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1

Query:      621 ATGGTGGAAAGAGCTTGGTTTGGCAGAGGAGTTGAAATTTGCTAGAGACCAACCCCTAAAATGGTACCTCTGGACAGTGGCAAGTCTACCAGATCCAAGCTTGTCTGAAGAGAGGATTGAACTAACTAAACCCATTTCTCTCGTCTACATAATAGATGATATTTTTGATGTTTATGGGACACTAGACGAACTCACTCTTTTCACAGACGCAGTTAATAA 839
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93262932 ATGGTGGAAAGAGCTTGGTTTGGCAGAGGAGTTGAAATTTGCTAGAGACCAACCCCTAAAATGGTACCTCTGGACAGTGGCAAGTCTACCAGATCCAAGCTTGTCTGAAGAGAGGATTGAACTAACTAAACCCATTTCTCTCGTCTACATAATAGATGATATTTTTGATGTTTATGGGACACTAGACGAACTCACTCTTTTCACAGACGCAGTTAATAA 93262714

HSP 6 Score: 246.725 bits (133), Expect = 6.855e-63
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1

Query:      840 TTGGGAAATTAAAGAGCAGTTACCCGACTATTTGAAGATATGTTTCAAGGCACTTGATGATATAACCAACAAAATTAGCTACGTGGTGTACAGAAAACATGGATGGAACCCAATTGACTCCTTAAGAAAATCG 972
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93262231 TTGGGAAATTAAAGAGCAGTTACCCGACTATTTGAAGATATGTTTCAAGGCACTTGATGATATAACCAACAAAATTAGCTACGTGGTGTACAGAAAACATGGATGGAACCCAATTGACTCCTTAAGAAAATCG 93262099


Match Name	Summary
NC_044371.1	E-Value: 7.974e-137, PID: 97.77 Description: Cannabis sativa chromosome 1, cs10, whole genome shotgun sequence [more]

blastn of TPS CDS against cs10 mRNA

Performed on: 2020-09-05
Details: blastn of TPS CDS against cs10 mRNA
Display provided by the neXtProt Feature Viewer

Show Results Table

[Close]

BLAST of TPS63 vs. Genbank
Match Name: XM_030635393.1
Description: PREDICTED: Cannabis sativa (3S,6E)-nerolidol synthase 1 (LOC115707431), mRNA

HSP 1 Score: 2693.54 bits (1458), Expect = 0.000e+0
Identity = 1480/1491 (99.26%), Postives = 1480/1491 (99.26%), Query Frame = 1

Query:        1 GAACGCTCCATAGAAGCTTTGAACTTGGTCAACGCTGTGCTTAGAGTCGGCATTGATTATCATGTCCAAGATGAGATTAAATCTATCCTTGAAAGGGAACATATAATTTTCAGTGACCATATTAGTAACCAATATTTTAATAATATTAATCAAGACCACCTGTATGAGGTTTCTCTTCGTTTCCGATTACTGAGACAAGGAGGTTATGATGTCTCTCCAGATGTGTTTAACGAGTTGATGAAGGACAAAAAGGGAAATTTCAATGTTTTAGTGGAAGAAGACAGAGAGGGACTAAGAGAATTGTTTGAAGCCTCACAAGTAAGAATAGAAGGAGAAGAGGTACTAGAGGAAGCTGAAGTGTTCAGTGGCGAACACCTAAAAGAATGGGCAAATCTTCATCGTCATACGAGTGAAGCTCGAAGTATTCAATTAACGTTAGACCAACCTTGTCATAAAAGCTTGGCCAGGGTCACATCTCCAAACTTTTTGGACAGTTTCTCAGCCAACACTGCTACCAGAGACCAAGGCTGGACCTGGATGACCCTTTTAAACAAACTGGTCACAATGGACTTCAAAATAGTTCAGTCTATTCACCAAAGGGAAATTGTTCAAGTCTCCAAATGGTGGAAAGAGCTTGGTTTGGCAGAGGAGTTGAAATTTGCTAGAGACCAACCCCTAAAATGGTACCTCTGGACAGTGGCAAGTCTACCAGATCCAAGCTTGTCTGAAGAGAGGATTGAACTAACTAAACCCATTTCTCTCGTCTACATAATAGATGATATTTTTGATGTTTATGGGACACTAGACGAACTCACTCTTTTCACAGACGCAGTTAATAATTGGGAAATTAAAGAGCAGTTACCCGACTATTTGAAGATATGTTTCAAGGCACTTGATGATATAACCAACAAAATTAGCTACGTGGTGTACAGAAAACATGGATGGAACCCAATTGACTCCTTAAGAAAATCGTGGGGAAAACTGTGCAATGCGTTCTTGTTAGAAGCAGAGTGGTTTGGTTGTGGGAAGTTGCCAAATGAAGAGGAGTATTTGAAGAACGCGATTGTGAGTTCTGGTGTACACGTGGTGCTAGTTCATATGTTCTTTCTCTTAGGTGAAGGTATATCCATGGAAGCTGTAAACTTACTGGACAACATTCCAGGCCTTGTGTCTTCTACAGCAGCAATTCTTCGTCTTTGGGATGACTTAGGAAGTGCCAAGGATGAGAATCAAAATGGGCATGATGGGTCTTACGTTGAGTGCTACATGAAAAGACACAAGGAGTGTTCAATGGGCGAAGCAAGGGAGCAAGTGATTCGTATGATTAAAAATGAGTGGGAACGCCTCAATAAGGAGTGTTTCTCGCCAAAACATTTTCCCATGTGCTTCAGAAAGGGTTGTCTTAATGCTGCTAGGATGGTTCCAGTGATGTATGACTATGATGATCATCATCGCCTTCCAAGCCTCCAGAATTATATCAACTCACTTCTC 1491
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct:      240 GAACGCTCCATAGAAGCTTTGAACTTGGTCAACGCTGTGCTTAGAGTCGGCATTGATTATCATGTCCAAGATGAGATTAAATCTATCCTTGAAAGGGAACATATAATTTTCAGTGACCATATTAGTAACCAATATTTTAATAATATTAATCAAGACCACCTGTATGAGGTTTCTCTTCGTTTCCGATTACTGAGACAAGGAGGTTATGATGTCTCTCCAGATGTGTTTAACGAGTTGATGAAGGACAAAAAGGGAAATTTCAATGTTTTAGTGGAAGAAGACAGAGAGGGACTAAGAGAATTGTTTGAAGCCTCACAAGTAAGAATAGAAGGAGAAGAGGTACTAGAGGAAGCTGAAGTGTTCAGTGGCGGACACCTAAAAGAATGGGCAAATCTTCATCGTCATACGAGTGAAGCTCGAAGTATTCAATTAACGCTAGACCAACCTTGTCATAAAAGCTTGGCCAGGGTCACATCTCCAAACTTTTTGGACAGTTTCTCGGCCAACACTACTACCATAGACCAAGGCTGGACCTGGATGACCCTTTTAAACAAACTGGTCACAATGGACTTCAAAATAGTACAGTCTATTCACCAAAGGGAAATTGTCCTTGTCTCCAAATGGTGGAAAGAGCTTGGTTTGGCAGAGGAGTTGAAATTTGCTAGAGACCAACCCCTAAAATGGTACCTCTGGACAGTGGCAAGTCTACCAGATCCAAGCTTGTCTGAAGAGAGGATTGAACTAACTAAACCCATTTCTCTCGTCTACATAATAGATGATATTTTTGATGTTTATGGGACACTAGACGAACTCACTCTTTTCACAGACGCAGTTAATAATTGGGAAATTAAAGAGCAGTTACCCGACTATTTGAAGATATGTTTCAAGGCACTTGATGATATAACCAACAAAATTAGCTACGTGGTGTACAGAAAACATGGATGGAACCCAATTGACTCCTTAAGAAAATCGTGGGGAAAACTGTGCAATGCGTTCTTGTTAGAAGCAGAGTGGTTTGGTTGTGGGAAGTTGCCAAATGAAGAGGAGTATTTGAAGAACGCGATTGTGAGTTCTGGTGTACACGTGGTGCTAGTTCATATGTTCTTTCTCTTAGGTGAAGGTATATCCATGGAAGCTGTAAACTTACTGGACAACATTCCAGGCCTTGTGTCTTCTACAGCAGCAATTCTTCGTCTTTGGGATGACTTAGGAAGTGCCAAGGATGAGAATCAAAATGGGCATGATGGGTCTTACGTTGAGTGCTACATGAAAAGACACAAGGAGTGTTCAATGGGCGAAGCAAGGGAGCAAGTGATTCGTATGATTAAAAATGAGTGGGAACGCCTCAATAAGGAGTGTTTCTCGTCAAAACATTTTCCCATGTGCTTCAGAAAGGGTTGTCTTAATGCTGCTAGGATGGTTCCAGTGATGTATGACTATGATGATCATCATCGCCTTCCAGGCCTCCAGAATTATATCAACTCACTTCTC 1730


Match Name	Summary
XM_030635393.1	E-Value: 0.000e+0, PID: 99.26 Description: PREDICTED: Cannabis sativa (3S,6E)-nerolidol synthase 1 (LOC115707431), mRNA [more]

Interpro result TPS-TSA-THC Csativa

Performed on: 2021-09-02
Display provided by the neXtProt Feature Viewer


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005630	Terpene synthase, metal-binding domain	PFAM	PF03936	Terpene_synth_C	coord: 186..447 e-value: 2.6E-83 score: 279.5
IPR001906	Terpene synthase, N-terminal domain	PFAM	PF01397	Terpene_synth	coord: 5..134 e-value: 5.9E-33 score: 114.2
IPR036965	Terpene synthase, N-terminal domain superfamily	GENE3D	1.50.10.130		coord: 1..193 e-value: 7.8E-42 score: 145.0
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10		coord: 194..497 e-value: 2.4E-118 score: 396.6
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 183..488
None	No IPR available	PANTHER	PTHR31225	FAMILY NOT NAMED	coord: 5..497
None	No IPR available	PANTHER	PTHR31225:SF99		coord: 5..497
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 26..62
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..25
None	No IPR available	TMHMM	TMhelix		coord: 7..29
IPR008930	Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid	SUPERFAMILY	48239	Terpenoid cyclases/Protein prenyltransferases	coord: 4..169

TPS63

Reanalysis of 21 trichome RNA-Seq samples, FN-clones109 (TMM50 minvalue)

Reanalysis of 21 trichome RNA-Seq samples, PK-clones109 (TMM50 minvalue)

Interpro result TPS-TSA-THC Csativa

blastn of TPS CDS against cs10 mRNA

blastn of TPS CDS against cs10 genome

blastn of TPS CDS against pkv5 mRNA

blastn of TPS CDS against pkv5 genome

NCBI Download

Sequences

Sequence	GAACGCTCCATAGAAGCTTTGAACTTGGTCAACGCTGTGCTTAGAGTCGG CATTGATTATCATGTCCAAGATGAGATTAAATCTATCCTTGAAAGGGAAC ATATAATTTTCAGTGACCATATTAGTAACCAATATTTTAATAATATTAAT CAAGACCACCTGTATGAGGTTTCTCTTCGTTTCCGATTACTGAGACAAGG AGGTTATGATGTCTCTCCAGATGTGTTTAACGAGTTGATGAAGGACAAAA AGGGAAATTTCAATGTTTTAGTGGAAGAAGACAGAGAGGGACTAAGAGAA TTGTTTGAAGCCTCACAAGTAAGAATAGAAGGAGAAGAGGTACTAGAGGA AGCTGAAGTGTTCAGTGGCGAACACCTAAAAGAATGGGCAAATCTTCATC GTCATACGAGTGAAGCTCGAAGTATTCAATTAACGTTAGACCAACCTTGT CATAAAAGCTTGGCCAGGGTCACATCTCCAAACTTTTTGGACAGTTTCTC AGCCAACACTGCTACCAGAGACCAAGGCTGGACCTGGATGACCCTTTTAA ACAAACTGGTCACAATGGACTTCAAAATAGTTCAGTCTATTCACCAAAGG GAAATTGTTCAAGTCTCCAAATGGTGGAAAGAGCTTGGTTTGGCAGAGGA GTTGAAATTTGCTAGAGACCAACCCCTAAAATGGTACCTCTGGACAGTGG CAAGTCTACCAGATCCAAGCTTGTCTGAAGAGAGGATTGAACTAACTAAA CCCATTTCTCTCGTCTACATAATAGATGATATTTTTGATGTTTATGGGAC ACTAGACGAACTCACTCTTTTCACAGACGCAGTTAATAATTGGGAAATTA AAGAGCAGTTACCCGACTATTTGAAGATATGTTTCAAGGCACTTGATGAT ATAACCAACAAAATTAGCTACGTGGTGTACAGAAAACATGGATGGAACCC AATTGACTCCTTAAGAAAATCGTGGGGAAAACTGTGCAATGCGTTCTTGT TAGAAGCAGAGTGGTTTGGTTGTGGGAAGTTGCCAAATGAAGAGGAGTAT TTGAAGAACGCGATTGTGAGTTCTGGTGTACACGTGGTGCTAGTTCATAT GTTCTTTCTCTTAGGTGAAGGTATATCCATGGAAGCTGTAAACTTACTGG ACAACATTCCAGGCCTTGTGTCTTCTACAGCAGCAATTCTTCGTCTTTGG GATGACTTAGGAAGTGCCAAGGATGAGAATCAAAATGGGCATGATGGGTC TTACGTTGAGTGCTACATGAAAAGACACAAGGAGTGTTCAATGGGCGAAG CAAGGGAGCAAGTGATTCGTATGATTAAAAATGAGTGGGAACGCCTCAAT AAGGAGTGTTTCTCGCCAAAACATTTTCCCATGTGCTTCAGAAAGGGTTG TCTTAATGCTGCTAGGATGGTTCCAGTGATGTATGACTATGATGATCATC ATCGCCTTCCAAGCCTCCAGAATTATATCAACTCACTTCTC
Sequence Length	1491
Sequence Checksum	badee9f274b297c6e393136763fbe242

Sequence

GAACGCTCCATAGAAGCTTTGAACTTGGTCAACGCTGTGCTTAGAGTCGG
CATTGATTATCATGTCCAAGATGAGATTAAATCTATCCTTGAAAGGGAAC
ATATAATTTTCAGTGACCATATTAGTAACCAATATTTTAATAATATTAAT
CAAGACCACCTGTATGAGGTTTCTCTTCGTTTCCGATTACTGAGACAAGG
AGGTTATGATGTCTCTCCAGATGTGTTTAACGAGTTGATGAAGGACAAAA
AGGGAAATTTCAATGTTTTAGTGGAAGAAGACAGAGAGGGACTAAGAGAA
TTGTTTGAAGCCTCACAAGTAAGAATAGAAGGAGAAGAGGTACTAGAGGA
AGCTGAAGTGTTCAGTGGCGAACACCTAAAAGAATGGGCAAATCTTCATC
GTCATACGAGTGAAGCTCGAAGTATTCAATTAACGTTAGACCAACCTTGT
CATAAAAGCTTGGCCAGGGTCACATCTCCAAACTTTTTGGACAGTTTCTC
AGCCAACACTGCTACCAGAGACCAAGGCTGGACCTGGATGACCCTTTTAA
ACAAACTGGTCACAATGGACTTCAAAATAGTTCAGTCTATTCACCAAAGG
GAAATTGTTCAAGTCTCCAAATGGTGGAAAGAGCTTGGTTTGGCAGAGGA
GTTGAAATTTGCTAGAGACCAACCCCTAAAATGGTACCTCTGGACAGTGG
CAAGTCTACCAGATCCAAGCTTGTCTGAAGAGAGGATTGAACTAACTAAA
CCCATTTCTCTCGTCTACATAATAGATGATATTTTTGATGTTTATGGGAC
ACTAGACGAACTCACTCTTTTCACAGACGCAGTTAATAATTGGGAAATTA
AAGAGCAGTTACCCGACTATTTGAAGATATGTTTCAAGGCACTTGATGAT
ATAACCAACAAAATTAGCTACGTGGTGTACAGAAAACATGGATGGAACCC
AATTGACTCCTTAAGAAAATCGTGGGGAAAACTGTGCAATGCGTTCTTGT
TAGAAGCAGAGTGGTTTGGTTGTGGGAAGTTGCCAAATGAAGAGGAGTAT
TTGAAGAACGCGATTGTGAGTTCTGGTGTACACGTGGTGCTAGTTCATAT
GTTCTTTCTCTTAGGTGAAGGTATATCCATGGAAGCTGTAAACTTACTGG
ACAACATTCCAGGCCTTGTGTCTTCTACAGCAGCAATTCTTCGTCTTTGG
GATGACTTAGGAAGTGCCAAGGATGAGAATCAAAATGGGCATGATGGGTC
TTACGTTGAGTGCTACATGAAAAGACACAAGGAGTGTTCAATGGGCGAAG
CAAGGGAGCAAGTGATTCGTATGATTAAAAATGAGTGGGAACGCCTCAAT
AAGGAGTGTTTCTCGCCAAAACATTTTCCCATGTGCTTCAGAAAGGGTTG
TCTTAATGCTGCTAGGATGGTTCCAGTGATGTATGACTATGATGATCATC
ATCGCCTTCCAAGCCTCCAGAATTATATCAACTCACTTCTC

Sequence Length

1491

Sequence Checksum

badee9f274b297c6e393136763fbe242

Summary

Resource Type	mRNA
Organism	Cannabis sativa L.
Name	TPS63
Identifier	TPS63
Time Accessioned	Thursday, November 21, 2024 - 09:59
Time Last Modified	Thursday, November 21, 2024 - 09:59